McAtamney Allyson, Ferranti Allison, Ludvik Denise A, Yildiz Fitnat H, Mandel Mark J, Hayward Taylor, Sanchez Laura M
1156 High St, Department of Chemistry and Biochemistry, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.
Plasmion GmbH, Augsburg, Germany.
bioRxiv. 2024 Jul 18:2024.07.17.604007. doi: 10.1101/2024.07.17.604007.
Microbial metabolomics studies are a common approach to identifying microbial strains that have a capacity to produce new chemistries both and . A limitation to applying microbial metabolomics to the discovery of new chemical entities is the rediscovery of known compounds, or "known unknowns." One contributing factor to this rediscovery is the majority of laboratories use one ionization source-electrospray ionization (ESI)-to conduct metabolomics studies. Although ESI is an efficient, widely adopted ionization method, its widespread use may contribute to the re-identification of known metabolites. Here, we present the use of a dielectric barrier discharge ionization (DBDI) for microbial metabolomics applications through the use of soft ionization chemical reaction in-transfer (SICRIT). Additionally, we compared SICRIT to ESI using two different species-, a symbiotic marine bacterium, and , a pathogenic bacterium. Overall, we found that the SICRIT source ionizes a different set of metabolites than ESI, and it has the ability to ionize lipids more efficiently than ESI in positive mode. This work highlights the value of using more than one ionization source for the detection of metabolites.
微生物代谢组学研究是一种常用方法,用于鉴定有能力产生新化学物质的微生物菌株。将微生物代谢组学应用于发现新化学实体的一个限制是重新发现已知化合物,即“已知的未知物”。导致这种重新发现的一个因素是大多数实验室使用一种电离源——电喷雾电离(ESI)——来进行代谢组学研究。虽然ESI是一种高效、广泛采用的电离方法,但其广泛使用可能导致已知代谢物的重新鉴定。在此,我们通过使用软电离化学反应转移(SICRIT)展示了介质阻挡放电电离(DBDI)在微生物代谢组学应用中的使用。此外,我们使用两种不同的物种——一种共生海洋细菌和一种致病细菌,将SICRIT与ESI进行了比较。总体而言,我们发现SICRIT源电离的代谢物集与ESI不同,并且在正模式下它比ESI更有效地电离脂质。这项工作突出了使用多种电离源检测代谢物的价值。