Department of Microbiology and Biotechnology, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Hermann-Weigmann-Straße 1, 24103, Kiel, Germany.
Microbial Safety Division, National Institute of Agricultural Sciences, Rural Development Administration, Wanju, 55365, Republic of Korea.
Curr Microbiol. 2024 Aug 7;81(9):299. doi: 10.1007/s00284-024-03811-9.
Four Gram-negative, facultative anaerobic, oxidase-negative and catalase-positive strains were isolated from lettuce sample collected from test beds at the National Institute of Agricultural Sciences in Wanju, South Korea. The whole genome sequences of the strains ranged from 4,624,629 to 4,849,846 bp in size, with DNA G + C contents of 54.32 to 54.56 mol%. Phylogenetic analyses based on 16S rRNA gene and four housekeeping (atpD, gyrB, infB, and rpoB) gene sequences showed that the four strains clustered closely together with Scandinavium type strains within the Enterobacteriaceae family. Moreover, the average nucleotide identity and digital DNA-DNA hybridization value of the proposed type strain (V105_6) with the closely related Scandinavium type strains were in the range of 85.71-86.16% and 30.2-31.2%, respectively, which were all below the species delineation threshold values. The major cellular fatty acid of V105_6 was C. Growth was observed at 7, 10 and 35 °C, and in the presence of 7% NaCl concentration. Based on phenotypic and genotypic results, strain V105_6 represents a novel species of the genus Scandinavium, for which the name Scandinavium lactucae sp. nov. is proposed. The type strain is V105_6 (= LMG 33389 = DSM 117134).
从韩国完州国立农业科学院试验田采集的生菜样本中分离到 4 株革兰氏阴性、兼性厌氧、氧化酶阴性和接触酶阳性的菌株。这 4 株菌的全基因组序列大小在 4,624,629 到 4,849,846bp 之间,DNA G+C 含量为 54.32 到 54.56mol%。基于 16S rRNA 基因和 4 个看家(atpD、gyrB、infB 和 rpoB)基因序列的系统发育分析表明,这 4 株菌与肠杆菌科的 Scandinavium 型菌株密切聚类。此外,提议的模式株(V105_6)与密切相关的 Scandinavium 型菌株的平均核苷酸同一性和数字 DNA-DNA 杂交值分别在 85.71-86.16%和 30.2-31.2%的范围内,均低于种的划分阈值。V105_6 的主要细胞脂肪酸是 C. 在 7、10 和 35°C 以及 7%NaCl 浓度下观察到生长。基于表型和基因型结果,菌株 V105_6 代表了 Scandinavium 属的一个新种,因此提议将其命名为Scandinavium lactucae sp. nov.。模式株为 V105_6(=LMG 33389=DSM 117134)。