Maddock Daniel, Kile Helene, Denman Sandra, Arnold Dawn, Brady Carrie
Centre for Research in Bioscience, School of Applied Sciences, University of the West of England, Bristol, United Kingdom.
Centre for Ecosystems, Society and Biosecurity, Forest Research, Farnham, United Kingdom.
Front Microbiol. 2022 Oct 11;13:1011653. doi: 10.3389/fmicb.2022.1011653. eCollection 2022.
While investigating the bacterial populations of environmental samples taken from a mix of healthy and Acute Oak Decline afflicted (pedunculate or English oak) rhizosphere soil samples and swabs of bleeding lesions on spp. (lime) and (red oak) trees, several strains belonging to the order were isolated using selective media and enrichment broth. Seven strains from the rhizosphere, three strains from spp. and one from were investigated, with their taxonomic status determined a polyphasic taxonomic approach. Initially stains were identified as potential members of the recently described genus , based on the partial sequencing of three housekeeping genes. Further analysis of phenotypic traits, including fatty acid profiles, coupled with 16S rRNA gene and phylogenomic analysis of whole genome sequences were applied to a subset of the strains. Phylogenetic and phylogenomic analysis repeatedly placed the isolates in a monophyletic clade within , with four distinct clusters observed, one of which corresponded to , the type species of the genus. The remaining three clusters could be phenotypically and genotypically differentiated from each other and As such, we describe three novel species of the genus, for which we propose the names sp. nov. (type strain H11S7 = LMG 32612 = CCUG 76179), sp. nov. (type strain H17S15 = LMG 32613 = CCUG 76183) and sp. nov. (type strain TWS1a = LMG 32614 = CCUG 76188). Additionally, the descriptions of the genus and the type species, , are emended.
在对从健康和患有急性橡树衰退病(有柄或英国栎)的根际土壤样本以及欧洲椴树和红橡树出血病斑拭子混合采集的环境样本中的细菌种群进行调查时,使用选择性培养基和富集肉汤分离出了几株属于该目(未提及具体目名)的菌株。对来自栎树根际的7株菌株、欧洲椴树的3株菌株和红橡树的1株菌株进行了研究,采用多相分类法确定了它们的分类地位。最初,根据三个管家基因的部分测序,菌株被鉴定为最近描述的属(未提及具体属名)的潜在成员。对包括脂肪酸谱在内的表型特征进行进一步分析,并结合16S rRNA基因和全基因组序列的系统发育分析,应用于部分菌株。系统发育和系统基因组分析反复将分离株置于该属(未提及具体属名)内的一个单系分支中,观察到四个不同的簇,其中一个对应于该属的模式种(未提及具体种名)。其余三个簇在表型和基因型上彼此不同,也与模式种不同。因此,我们描述了该属的三个新物种,分别命名为新种(模式菌株H11S7 = LMG 32612 = CCUG 76179)、新种(模式菌株H17S15 = LMG 32613 = CCUG 76183)和新种(模式菌株TWS1a = LMG 32614 = CCUG 76188)。此外,对该属及其模式种(未提及具体种名)的描述进行了修订。