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六种新型噬菌体的分离与鉴定

Isolation and Characterization of Six Novel Phages.

作者信息

Schwarz Cory, Mathieu Jacques, Laverde Gomez Jenny, Miller Megan R, Tikhonova Marina, Hamor Clark, Alvarez Pedro J J

机构信息

Department of Civil and Environmental Engineering, Rice University, Houston, Texas, USA.

Sentinel Environmental, Houston, Texas, USA.

出版信息

Phage (New Rochelle). 2024 Jun 21;5(2):63-75. doi: 10.1089/phage.2023.0028. eCollection 2024 Jun.

Abstract

INTRODUCTION

, a human and animal pathogen, is the primary etiologic agent of bovine liver abscesses and a driving factor for prophylactic antibiotic use in the fed cattle industry. Considering calls to reduce agricultural antibiotic use, we isolated phages capable of killing as an alternative or complementary biocontrol strategy.

METHODS

Six novel phages (φFN37, φRTG5, φKSUM, φHugo, φPaco, and φBB) were isolated from rumen fluid or ruminal isolates and subjected to host range testing on both subspecies. Four subspecies, phages, were tested for cross-resistance and host growth inhibition individually and in pairs. Additionally, genomic sequencing, annotation, and analysis were performed.s.

RESULTS

Four of six isolated phages were able to form lysogens, although all six contained lysogeny-related genes. φKSUM and φBB, did not form lysogens and were able to infect both subspecies. Four phages could infect 8L1 (a liver abscess model challenge strain) . Genomic analysis showed that these phages belong to class with genome sizes ranging from 35 kbp to 111 kbp and GC values ranging from 26% to 36% and have extremely limited similarity to other deposited phage genomes infecting or other genera.

CONCLUSIONS

Although all phages isolated contained sequences bearing similarities to genes implicated in lysogeny, the four selected for use in cocktails showed potential in inhibiting host growth, with several demonstrating promising attributes for biocontrol and therapeutic applications. Phage cocktails that may offer enhanced antibacterial activity were also identified, indicating the potential of some lysogenic phages to be adapted for biocontrol or therapeutic purposes when lytic phages are difficult to obtain.

摘要

引言

作为一种人畜共患病原体,是牛肝脓肿的主要病因,也是育肥牛行业预防性使用抗生素的一个驱动因素。考虑到减少农业抗生素使用的呼声,我们分离出了能够杀死的噬菌体,作为一种替代或补充性的生物防治策略。

方法

从瘤胃液或瘤胃分离物中分离出六种新型噬菌体(φFN37、φRTG5、φKSUM、φHugo、φPaco和φBB),并对两个亚种进行宿主范围测试。对四个亚种的噬菌体分别和成对进行交叉耐药性和宿主生长抑制测试。此外,还进行了基因组测序、注释和分析。

结果

六个分离出的噬菌体中有四个能够形成溶原菌,尽管所有六个都含有与溶原性相关的基因。φKSUM和φBB不能形成溶原菌,并且能够感染两个亚种。四种噬菌体能够感染8L1(一种肝脓肿模型攻击菌株)。基因组分析表明,这些噬菌体属于类,基因组大小从35 kbp到111 kbp不等,GC值从26%到36%不等,与其他已存档的感染或其他属的噬菌体基因组相似度极低。

结论

尽管分离出的所有噬菌体都含有与溶原性相关基因相似的序列,但选择用于混合制剂的四种噬菌体在抑制宿主生长方面显示出潜力,其中几种在生物防治和治疗应用方面具有有前景的特性。还鉴定出了可能具有增强抗菌活性的噬菌体混合制剂,这表明当难以获得裂解性噬菌体时,一些溶原性噬菌体具有用于生物防治或治疗目的的潜力。

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