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AlphaFold2在生物医学研究中的应用:助力疾病诊断策略的发展

AlphaFold2 in biomedical research: facilitating the development of diagnostic strategies for disease.

作者信息

Zhang Hong, Lan Jiajing, Wang Huijie, Lu Ruijie, Zhang Nanqi, He Xiaobai, Yang Jun, Chen Linjie

机构信息

School of Laboratory Medicine, Hangzhou Medical College, Hangzhou, China.

Key Laboratory of Biomarkers and In Vitro Diagnosis Translation of Zhejiang Province, Hangzhou, China.

出版信息

Front Mol Biosci. 2024 Jul 30;11:1414916. doi: 10.3389/fmolb.2024.1414916. eCollection 2024.

DOI:10.3389/fmolb.2024.1414916
PMID:39139810
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11319189/
Abstract

Proteins, as the primary executors of physiological activity, serve as a key factor in disease diagnosis and treatment. Research into their structures, functions, and interactions is essential to better understand disease mechanisms and potential therapies. DeepMind's AlphaFold2, a deep-learning protein structure prediction model, has proven to be remarkably accurate, and it is widely employed in various aspects of diagnostic research, such as the study of disease biomarkers, microorganism pathogenicity, antigen-antibody structures, and missense mutations. Thus, AlphaFold2 serves as an exceptional tool to bridge fundamental protein research with breakthroughs in disease diagnosis, developments in diagnostic strategies, and the design of novel therapeutic approaches and enhancements in precision medicine. This review outlines the architecture, highlights, and limitations of AlphaFold2, placing particular emphasis on its applications within diagnostic research grounded in disciplines such as immunology, biochemistry, molecular biology, and microbiology.

摘要

蛋白质作为生理活动的主要执行者,是疾病诊断和治疗的关键因素。对其结构、功能及相互作用的研究对于更好地理解疾病机制和潜在治疗方法至关重要。DeepMind公司的AlphaFold2是一种深度学习蛋白质结构预测模型,已被证明具有极高的准确性,广泛应用于诊断研究的各个方面,如疾病生物标志物研究、微生物致病性研究、抗原-抗体结构研究和错义突变研究。因此,AlphaFold2是连接基础蛋白质研究与疾病诊断突破、诊断策略发展以及新型治疗方法设计和精准医学进步的杰出工具。本综述概述了AlphaFold2的架构、亮点和局限性,特别强调了其在基于免疫学、生物化学、分子生物学和微生物学等学科的诊断研究中的应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7af9/11319189/2bf858fa91db/fmolb-11-1414916-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7af9/11319189/97424f66dec2/fmolb-11-1414916-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7af9/11319189/d7f4941023a8/fmolb-11-1414916-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7af9/11319189/c765ea62476b/fmolb-11-1414916-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7af9/11319189/2bf858fa91db/fmolb-11-1414916-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7af9/11319189/97424f66dec2/fmolb-11-1414916-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7af9/11319189/d7f4941023a8/fmolb-11-1414916-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7af9/11319189/c765ea62476b/fmolb-11-1414916-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7af9/11319189/2bf858fa91db/fmolb-11-1414916-g004.jpg

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本文引用的文献

1
Accurate structure prediction of biomolecular interactions with AlphaFold 3.利用 AlphaFold 3 进行生物分子相互作用的精确结构预测。
Nature. 2024 Jun;630(8016):493-500. doi: 10.1038/s41586-024-07487-w. Epub 2024 May 8.
2
RoseTTAFold expands to all-atom for biomolecular prediction and design.RoseTTAFold扩展至全原子水平用于生物分子预测与设计。
Nat Biotechnol. 2024 Apr;42(4):571. doi: 10.1038/s41587-024-02211-5.
3
Multi-level bioinformatics resources support drug target discovery of protein-protein interactions.多层次生物信息学资源支持蛋白质-蛋白质相互作用的药物靶点发现。
Drug Discov Today. 2024 May;29(5):103979. doi: 10.1016/j.drudis.2024.103979. Epub 2024 Apr 10.
4
Generalized biomolecular modeling and design with RoseTTAFold All-Atom.基于 RoseTTAFold All-Atom 的广义生物分子建模与设计。
Science. 2024 Apr 19;384(6693):eadl2528. doi: 10.1126/science.adl2528.
5
Evaluation of AlphaFold antibody-antigen modeling with implications for improving predictive accuracy.评估 AlphaFold 抗体-抗原建模对提高预测准确性的影响。
Protein Sci. 2024 Jan;33(1):e4865. doi: 10.1002/pro.4865.
6
Predicting multiple conformations via sequence clustering and AlphaFold2.通过序列聚类和AlphaFold2预测多种构象
Nature. 2024 Jan;625(7996):832-839. doi: 10.1038/s41586-023-06832-9. Epub 2023 Nov 13.
7
Investigating the conformational landscape of AlphaFold2-predicted protein kinase structures.探究AlphaFold2预测的蛋白激酶结构的构象景观。
Bioinform Adv. 2023 Sep 15;3(1):vbad129. doi: 10.1093/bioadv/vbad129. eCollection 2023.
8
An alpha-helix variant p.Arg156Pro in LMNA as a cause of hereditary dilated cardiomyopathy: genetics and bioinfomatics exploration.LMNA 中 p.Arg156Pro 变异的α-螺旋变体导致遗传性扩张型心肌病:遗传学和生物信息学探索。
BMC Med Genomics. 2023 Oct 2;16(1):229. doi: 10.1186/s12920-023-01661-1.
9
Evaluation of the Ability of AlphaFold to Predict the Three-Dimensional Structures of Antibodies and Epitopes.评估 AlphaFold 预测抗体和抗原三维结构的能力。
J Immunol. 2023 Nov 15;211(10):1578-1588. doi: 10.4049/jimmunol.2300150.
10
Accurate proteome-wide missense variant effect prediction with AlphaMissense.使用 AlphaMissense 进行精确的全蛋白质错义变异效应预测。
Science. 2023 Sep 22;381(6664):eadg7492. doi: 10.1126/science.adg7492.