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通用冷 RNA 相变。

Universal cold RNA phase transitions.

机构信息

Small Biosystems Lab, Condensed Matter Physics Department, Universitat de Barcelona, Barcelona 08028, Spain.

Institut de Nanociència i Nanotecnologia, Universitat de Barcelona, Barcelona 08028, Spain.

出版信息

Proc Natl Acad Sci U S A. 2024 Aug 20;121(34):e2408313121. doi: 10.1073/pnas.2408313121. Epub 2024 Aug 16.

Abstract

RNA's diversity of structures and functions impacts all life forms since primordia. We use calorimetric force spectroscopy to investigate RNA folding landscapes in previously unexplored low-temperature conditions. We find that Watson-Crick RNA hairpins, the most basic secondary structure elements, undergo a glass-like transition below [Formula: see text]C where the heat capacity abruptly changes and the RNA folds into a diversity of misfolded structures. We hypothesize that an altered RNA biochemistry, determined by sequence-independent ribose-water interactions, outweighs sequence-dependent base pairing. The ubiquitous ribose-water interactions lead to universal RNA phase transitions below , such as maximum stability at [Formula: see text]C where water density is maximum, and cold denaturation at [Formula: see text]C. RNA cold biochemistry may have a profound impact on RNA function and evolution.

摘要

RNA 的结构和功能多样性从原始生命形式开始就影响着所有生命形式。我们使用量热力谱技术在以前未探索的低温条件下研究 RNA 折叠景观。我们发现,沃森-克里克 RNA 发夹,最基本的二级结构元件,在 [Formula: see text]C 以下会发生玻璃态转变,此时热容突然发生变化,RNA 折叠成多种错误折叠的结构。我们假设,由序列无关的核糖-水相互作用决定的改变的 RNA 生物化学,超过了序列依赖的碱基配对。普遍存在的核糖-水相互作用导致了普遍的 RNA 相转变,例如在 [Formula: see text]C 时最大稳定性,此时水密度最大,以及在 [Formula: see text]C 时的冷变性。RNA 低温生物化学可能对 RNA 功能和进化产生深远影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7c9/11348302/bec3c1b7e6c3/pnas.2408313121fig01.jpg

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