Tapia-Rojo Rafael, Mora Marc, Board Stephanie, Walker Jane, Boujemaa-Paterski Rajaa, Medalia Ohad, Garcia-Manyes Sergi
Single Molecule Mechanobiology Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, London, UK.
Department of Physics, Randall Centre for Cell and Molecular Biophysics, Centre for the Physical Science of Life and London Centre for Nanotechnology, King's College London, Strand, WC2R 2LS London, United Kingdom.
Nat Phys. 2023 Jan;19(1):52-60. doi: 10.1038/s41567-022-01808-4. Epub 2022 Nov 7.
Statistical mechanics can describe the major conformational ensembles determining the equilibrium free-energy landscape of a folding protein. The challenge is to capture the full repertoire of low-occurrence conformations separated by high kinetic barriers that define complex landscapes. Computationally, enhanced sampling methods accelerate the exploration of molecular rare events. However, accessing the entire protein's conformational space in equilibrium experiments requires technological developments to enable extended observation times. We developed single-molecule magnetic tweezers to capture over a million individual transitions as a single talin protein unfolds and refolds under force in equilibrium. When observed at classically-probed timescales, talin folds in an apparently uncomplicated two-state manner. As the sampling time extends from minutes to days, the underlying energy landscape exhibits gradually larger signatures of complexity, involving a finite number of well-defined rare conformations. A fluctuation analysis allows us to propose plausible structures of each low-probability conformational state. The physiological relevance of each distinct conformation can be connected to the binding of the cytoskeletal protein vinculin, suggesting an extra layer of complexity in talin-mediated mechanotransduction. More generally, our experiments directly test the fundamental notion that equilibrium dynamics depend on the observation timescale.
统计力学能够描述决定折叠蛋白平衡自由能景观的主要构象系综。挑战在于捕捉由定义复杂景观的高动力学势垒分隔的低发生率构象的全部组成。在计算上,增强采样方法加速了对分子罕见事件的探索。然而,在平衡实验中获取整个蛋白质的构象空间需要技术发展以实现更长的观测时间。我们开发了单分子磁镊,以捕捉超过一百万个单独的转变,此时单个踝蛋白在平衡状态下受力展开和重新折叠。在经典探测的时间尺度上观察时,踝蛋白以一种明显简单的两态方式折叠。随着采样时间从几分钟延长到几天,潜在的能量景观逐渐呈现出更大的复杂性特征,涉及有限数量的明确罕见构象。波动分析使我们能够提出每个低概率构象状态的合理结构。每个不同构象的生理相关性可以与细胞骨架蛋白纽蛋白的结合联系起来,这表明在踝蛋白介导的机械转导中存在额外的复杂性层次。更普遍地说,我们的实验直接检验了平衡动力学取决于观测时间尺度这一基本概念。