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一种新型与线粒体自噬相关的 5 基因特征用于急性心肌梗死的诊断。

Characterization of a novel mitophagy-related 5-genes signature for diagnosis of acute myocardial infarction.

机构信息

Institute for Regenerative Medicine, Shanghai East Hospital, Shanghai Key Laboratory of Signaling and Disease Research, Frontier Science Center for Stem Cell Research, School of Life Sciences and Technology, Tongji University, Shanghai 200092, China; Department of Cardiology, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai 200072, China.

Institute for Regenerative Medicine, Shanghai East Hospital, Shanghai Key Laboratory of Signaling and Disease Research, Frontier Science Center for Stem Cell Research, School of Life Sciences and Technology, Tongji University, Shanghai 200092, China; Tongji University School of Medicine, Shanghai, China.

出版信息

Vascul Pharmacol. 2024 Sep;156:107417. doi: 10.1016/j.vph.2024.107417. Epub 2024 Aug 17.

Abstract

Myocardial infarction (MI) and the ensuing heart failure (HF) remain the main cause of morbidity and mortality worldwide. One of the strategies to combat MI and HF lies in the ability to accurately predict the onset of these disorders. Alterations in mitochondrial homeostasis have been reported to be involved in the pathogenesis of various cardiovascular diseases (CVDs). In this regard, perturbations to mitochondrial dynamics leading to impaired clearance of dysfunctional mitochondria have been previously established to be a crucial trigger for MI/HF. In this study, we found that MI patients could be classified into three clusters based on the expression levels of mitophagy-related genes and consensus clustering. We identified a mitophagy-related diagnostic 5-genes signature for MI using support vector machines-Recursive Feature Elimination (SVM-RFE) and random forest, with the area under the ROC curve (AUC) value of the predictive model at 0.813. Additionally, the single-cell transcriptome and pseudo-time analyses showed that the mitoscore was significantly upregulated in macrophages, endothelial cells, pericytes, fibroblasts and monocytes in patients with ischemic cardiomyopathy, while sequestosome 1 (SQSTM1) exhibited remarkable increase in the infarcted (ICM) and non-infarcted (ICMN) myocardium samples dissected from the left ventricle compared with control samples. Lastly, through analysis of peripheral blood from MI patients, we found that the expression of SQSTM1 is positively correlated with troponin-T (P < 0.0001, R = 0.4195, R2 = 0.1759). Therefore, this study provides the rationale for a cell-specific mitophagy-related gene signature as an additional supporting diagnostic for CVDs.

摘要

心肌梗死 (MI) 和随后的心力衰竭 (HF) 仍然是全球发病率和死亡率的主要原因。对抗 MI 和 HF 的策略之一在于能够准确预测这些疾病的发作。已经报道线粒体动态平衡的改变与各种心血管疾病 (CVD) 的发病机制有关。在这方面,先前已经确定导致功能失调的线粒体清除受损的线粒体动力学扰动是 MI/HF 的关键触发因素。在这项研究中,我们发现 MI 患者可以根据自噬相关基因的表达水平和共识聚类分为三个簇。我们使用支持向量机-递归特征消除 (SVM-RFE) 和随机森林,为 MI 确定了一个与自噬相关的诊断 5 基因特征,预测模型的 ROC 曲线下面积 (AUC) 值为 0.813。此外,单细胞转录组和拟时分析表明,在缺血性心肌病患者的巨噬细胞、内皮细胞、周细胞、成纤维细胞和单核细胞中,mitoscore 显著上调,而自噬小体 1 (SQSTM1) 在取自左心室的梗死 (ICM) 和非梗死 (ICMN) 心肌样本中与对照样本相比,表达明显增加。最后,通过对 MI 患者的外周血进行分析,我们发现 SQSTM1 的表达与肌钙蛋白 T 呈正相关 (P<0.0001,R=0.4195,R2=0.1759)。因此,这项研究为细胞特异性自噬相关基因特征作为 CVD 的附加支持诊断提供了依据。

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