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产OXA-48菌株11978的全基因组序列

Complete genome sequence of the OXA-48-producing strain 11978.

作者信息

Raro Otávio Hallal Ferreira, Nordmann Patrice, Poirel Laurent

机构信息

Medical and Molecular Microbiology, Faculty of Science and Medicine, University of Fribourg, Fribourg, Switzerland.

Swiss National Reference Center for Emerging Antibiotic Resistance (NARA), University of Fribourg, Fribourg, Switzerland.

出版信息

Microbiol Resour Announc. 2024 Sep 10;13(9):e0034124. doi: 10.1128/mra.00341-24. Epub 2024 Aug 20.

DOI:10.1128/mra.00341-24
PMID:39162464
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11390037/
Abstract

We announce the complete genome sequence of strain 11978 isolated from a patient hospitalized in Turkey in 2001. The genome belongs to sequence type 14 and includes three plasmids. Notably, it presents an IncL plasmid carrying , which demonstrated global success in terms of dissemination.

摘要

我们公布了2001年从一名在土耳其住院的患者身上分离出的11978菌株的全基因组序列。该基因组属于序列型14,包含三个质粒。值得注意的是,它含有一个携带[具体内容未给出]的IncL质粒,该质粒在传播方面取得了全球范围的成功。

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本文引用的文献

1
Diffusion of OXA-48 carbapenemase among urinary isolates of Klebsiella pneumoniae in non-hospitalized elderly patients.OXA-48 碳青霉烯酶在非住院老年患者中产 K. pneumoniae 的尿液分离株中的扩散。
BMC Microbiol. 2022 Jan 19;22(1):30. doi: 10.1186/s12866-022-02443-y.
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A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex.肺炎克雷伯菌及其相关种复合体的基因组监测框架和基因分型工具。
Nat Commun. 2021 Jul 7;12(1):4188. doi: 10.1038/s41467-021-24448-3.
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The Global Ascendency of OXA-48-Type Carbapenemases.OXA-48 型碳青霉烯酶的全球优势地位
Clin Microbiol Rev. 2019 Nov 13;33(1). doi: 10.1128/CMR.00102-19. Print 2019 Dec 18.
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器:从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
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Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu:通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
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Emergence of Escherichia coli producing OXA-48 β-lactamase in the community in Switzerland.瑞士社区中产 OXA-48 型β-内酰胺酶的大肠杆菌的出现。
Antimicrob Resist Infect Control. 2015 Mar 26;4:9. doi: 10.1186/s13756-015-0051-x. eCollection 2015.
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Prokka: rapid prokaryotic genome annotation.Prokka:快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
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Benchmarking of methods for genomic taxonomy.基因组分类方法的基准测试
J Clin Microbiol. 2014 May;52(5):1529-39. doi: 10.1128/JCM.02981-13. Epub 2014 Feb 26.
9
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Antimicrob Agents Chemother. 2014;58(1):467-71. doi: 10.1128/AAC.01344-13. Epub 2013 Nov 4.
10
Infections caused by OXA-48-producing Klebsiella pneumoniae in a tertiary hospital in Spain in the setting of a prolonged, hospital-wide outbreak.在西班牙一家三级医院进行的一次长期、全院范围的暴发中,由产 OXA-48 肺炎克雷伯菌引起的感染。
J Antimicrob Chemother. 2013 Jan;68(1):89-96. doi: 10.1093/jac/dks364. Epub 2012 Oct 7.