Zeng Zhefei, Zhang Zhengyan, Tso Norzin, Zhang Shutong, Chen Yan, Shu Qi, Li Junru, Liang Ziyi, Wang Ruoqiu, Wang Junwei, Qiong La
Key Laboratory of Biodiversity and Environment on the Qinghai-Tibetan Plateau, Ministry of Education, School of Ecology and Environment, Tibet University, Lhasa, China.
Yani Observation and Research Station for Wetland Ecosystem of the Tibet (Xizang) Autonomous Region, Tibet University, Lhasa, China.
Front Plant Sci. 2024 Aug 7;15:1449606. doi: 10.3389/fpls.2024.1449606. eCollection 2024.
, belonging to the Elaeagnaceae family, is an endemic plant species of the Qinghai-Tibet Plateau, valued for its remarkable ecological restoration capabilities, as well as medicinal and edible properties. Despite being acknowledged as a useful species, its mitochondrial genome data and those of other species of the Elaeagnaceae family are lacking to date. In this study, we, for the first time, successfully assembled the mitochondrial genome of , which is 464,208 bp long and comprises 31 tRNA genes, 3 rRNA genes, 37 protein-coding genes, and 3 pseudogenes. Analysis of the genome revealed a high copy number of the gene and a high prevalence of repetitive sequences, both of which likely contribute to genome rearrangement and adaptive evolution. Through nucleotide diversity and codon usage bias analyses, we identified specific genes that are crucial for adaptation to high-altitude conditions. Notably, genes such as , , , and exhibited signs of positive selection, indicating the presence of unique adaptive traits for survival in extreme environments. Phylogenetic analysis confirmed the close relationship between the Elaeagnaceae family and other related families, whereas intergenomic sequence transfer analysis revealed a substantial presence of homologous fragments among the mitochondrial, chloroplast, and whole genomes, which may be linked to the high-altitude adaptation mechanisms of . The findings of this study not only enrich our knowledge of molecular biology but also advance our understanding of the adaptive evolution of plants on the Qinghai-Tibet Plateau. This study provides a solid scientific foundation for the molecular breeding, conservation, and utilization of genetic resources.
属于胡颓子科,是青藏高原特有的植物物种,因其卓越的生态恢复能力以及药用和食用价值而受到重视。尽管被公认为是一种有用的物种,但迄今为止,其线粒体基因组数据以及胡颓子科其他物种的线粒体基因组数据仍然缺乏。在本研究中,我们首次成功组装了[物种名称]的线粒体基因组,其长度为464,208 bp,包含31个tRNA基因、3个rRNA基因、37个蛋白质编码基因和3个假基因。对该基因组的分析揭示了[基因名称]基因的高拷贝数和重复序列的高发生率,这两者都可能导致基因组重排和适应性进化。通过核苷酸多样性和密码子使用偏好性分析,我们确定了对适应高海拔条件至关重要的特定基因。值得注意的是,[基因名称1]、[基因名称2]、[基因名称3]和[基因名称4]等基因表现出正选择的迹象,表明存在在极端环境中生存的独特适应性状。系统发育分析证实了胡颓子科与其他相关科之间的密切关系,而基因组间序列转移分析揭示了线粒体、叶绿体和全基因组中大量同源片段的存在,这可能与[物种名称]的高海拔适应机制有关。本研究的结果不仅丰富了我们对[物种名称]分子生物学的认识,还推进了我们对青藏高原植物适应性进化的理解。本研究为[物种名称]遗传资源的分子育种、保护和利用提供了坚实的科学基础。