Department of Medicine, Department of Neuroscience, Rockefeller Neuroscience Institute, West Virginia University Health Science Center, Morgantown, West Virginia, United States of America.
PLoS One. 2024 Aug 23;19(8):e0307092. doi: 10.1371/journal.pone.0307092. eCollection 2024.
Epidemiological compartmental models, such as SEIR (Susceptible, Exposed, Infectious, and Recovered) models, have been generally used in analyzing epidemiological data and forecasting the trajectory of transmission of infectious diseases such as COVID-19. Experience shows that accurately forecasting the trajectory of COVID-19 transmission curve is a big challenge for researchers in the field of epidemiological modeling because multiple unquantified factors can affect the trajectory of COVID-19 transmission. In the past years, we used a new compartmental model, l-i SEIR model, to analyze the COVID-19 transmission trend in the United States. Unlike the conventional SEIR model and the delayed SEIR model that use or partially use the approximation of temporal homogeneity, the l-i SEIR model takes into account chronological order of infected individuals in both latent (l) period and infectious (i) period, and thus improves the accuracy in forecasting the trajectory of transmission of infectious diseases, especially during periods of rapid rise or fall in the number of infections. This paper describes (1) how to use the new SEIR model (a mechanistic model) combined with fitting methods to simulate or predict trajectory of COVID-19 transmission, (2) how social interventions and new variants of COVID-19 significantly change COVID-19 transmission trends by changing transmission rate coefficient βn, the fraction of susceptible people (Sn/N), and the reinfection rate, (3) why accurately forecasting COVID-19 transmission trends is difficult, (4) what are the strategies that we have used to improve the forecast outcome and (5) what are some successful examples that we have obtained.
流行病学 compartmental 模型,如 SEIR(易感、暴露、感染和恢复)模型,通常用于分析流行病学数据并预测 COVID-19 等传染病的传播轨迹。经验表明,准确预测 COVID-19 传播轨迹是流行病学建模领域研究人员面临的一大挑战,因为多个未量化的因素会影响 COVID-19 传播轨迹。在过去的几年中,我们使用了一种新的 compartmental 模型,即 l-i SEIR 模型,来分析美国 COVID-19 的传播趋势。与传统的 SEIR 模型和使用或部分使用时间均匀性近似的延迟 SEIR 模型不同,l-i SEIR 模型考虑了潜伏期(l)和感染期(i)中感染个体的时间顺序,从而提高了预测传染病传播轨迹的准确性,尤其是在感染人数快速上升或下降的时期。本文介绍了(1)如何使用新的 SEIR 模型(一种基于机制的模型)结合拟合方法来模拟或预测 COVID-19 传播轨迹,(2)社会干预和 COVID-19 的新变体如何通过改变传播率系数βn、易感人群比例(Sn/N)和再感染率来显著改变 COVID-19 的传播趋势,(3)为什么准确预测 COVID-19 传播趋势很困难,(4)我们已经使用了哪些策略来提高预测结果,以及(5)我们已经获得了哪些成功的例子。