来自JCM 5491长期连续培养的两个分离株的全基因组序列
Complete genome sequence of two isolates from long-term serial cultivation of JCM 5491.
作者信息
Umekage So
机构信息
Department of Food and Nutrition, Hakodate Junior College, Hakodate, Hokkaido, Japan.
Department of Food and Nutrition, Koriyama Women's University, Koriyama, Fukushima, Japan.
出版信息
Microbiol Resour Announc. 2024 Oct 10;13(10):e0041424. doi: 10.1128/mra.00414-24. Epub 2024 Aug 28.
Abstract
Here, I report the complete genome sequences of two JCM5491 mutants that were independently isolated from different lineages after approximately 9 years of long-term serial cultivation.
摘要
在此，我报告了两个JCM5491突变体的全基因组序列，这两个突变体是在经过约9年的长期连续传代培养后从不同谱系中独立分离得到的。
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本文引用的文献
1
fastp: an ultra-fast all-in-one FASTQ preprocessor.fastp：一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
2
NanoPack: visualizing and processing long-read sequencing data.NanoPack：可视化和处理长读测序数据。
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
3
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.DFAST：一个灵活的原核生物基因组注释管道，用于更快地发布基因组。
Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713.
4
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
5
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
6
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
7
Aseptic laboratory techniques: plating methods.无菌实验室技术：接种方法。
J Vis Exp. 2012 May 11(63):e3064. doi: 10.3791/3064.
8
Fast and accurate long-read alignment with Burrows-Wheeler transform.基于 Burrows-Wheeler 变换的快速准确长读比对。
Bioinformatics. 2010 Mar 1;26(5):589-95. doi: 10.1093/bioinformatics/btp698. Epub 2010 Jan 15.
9
Rapid, modified Kirby-Bauer susceptibility test with single, high-concentration antimicrobial disks.使用单一高浓度抗菌药物纸片的快速改良 Kirby-Bauer 药敏试验。
Antimicrob Agents Chemother. 1973 Mar;3(3):418-24. doi: 10.1128/AAC.3.3.418.
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