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44K分子的量子拓扑原子性质

Quantum Topological Atomic Properties of 44K molecules.

作者信息

Meza-González Brandon, Ramírez-Palma David I, Carpio-Martínez Pablo, Vázquez-Cuevas David, Martínez-Mayorga Karina, Cortés-Guzmán Fernando

机构信息

Facultad de Química, Universidad Nacional Autónoma de México, Ciudad de Méxinclude thexico, Mexico City, Mexico.

Instituto de Química, Unidad Mérida, Universidad Nacional Autónoma de México, Mérida, Yucatán, Mexico.

出版信息

Sci Data. 2024 Aug 29;11(1):945. doi: 10.1038/s41597-024-03723-0.

Abstract

We present a data set of quantum topological properties of atoms of 44K randomly selected molecules from the GDB-9 data set. These atomic properties were obtained as defined by the quantum theory of atoms in molecules (QTAIM) within an atomic basin, a region of real space bounded by zero-flux surfaces in the electron density gradient vector field. The wave function files were generated through DFT static calculations (B3LYP/6-31G), and the atomic properties were calculated using QTAIM. The calculated atomic properties include the energy of the atomic basin, the electronic population, the magnitude of the total dipole moment, and the magnitude of the total quadrupole moment. The atomic properties allow one to understand the chemical structure, reactivity, and molecular recognition. They can be incorporated into force fields for molecular dynamics or for predicting reactive sites. We believe that this data set could facilitate new studies in chemical informatics, machine learning applied to chemistry, and computational molecular design.

摘要

我们展示了一个数据集,该数据集包含从GDB - 9数据集中随机选取的44K个分子中原子的量子拓扑性质。这些原子性质是根据分子中原子的量子理论(QTAIM)在原子盆内定义的,原子盆是实空间中的一个区域,由电子密度梯度矢量场中的零通量面界定。波函数文件通过密度泛函理论(DFT)静态计算(B3LYP/6 - 31G)生成,原子性质使用QTAIM计算。计算得到的原子性质包括原子盆的能量、电子布居、总偶极矩的大小和总四极矩的大小。这些原子性质有助于理解化学结构、反应性和分子识别。它们可以被纳入分子动力学的力场中,或用于预测反应位点。我们相信这个数据集能够促进化学信息学、应用于化学的机器学习以及计算分子设计等方面的新研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7156/11362522/f3f09c42b9dc/41597_2024_3723_Fig1_HTML.jpg

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