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用于动态控制DNA纳米结构的人工细胞聚集体中的时空通信。

Spatiotemporal Communication in Artificial Cell Consortia for Dynamic Control of DNA Nanostructures.

作者信息

Llopis-Lorente Antoni, Shao Jingxin, Ventura Jordi, Buddingh Bastiaan C, Martínez-Máñez Ramón, van Hest Jan C M, Abdelmohsen Loai K E A

机构信息

Department of Chemical Engineering and Chemistry, Institute for Complex Molecular Systems, Department of Biomedical Engineering, Eindhoven University of Technology, PO Box 513, 5600 MB Eindhoven, The Netherlands.

Instituto Interuniversitario de Investigación de Reconocimiento Molecular y Desarrollo Tecnológico (IDM), Universitat Politècnica de València, Universitat de València, Camino de Vera s/n, 46022 València, Spain.

出版信息

ACS Cent Sci. 2024 Jul 22;10(8):1619-1628. doi: 10.1021/acscentsci.4c00702. eCollection 2024 Aug 28.

Abstract

The spatiotemporal orchestration of cellular processes is a ubiquitous phenomenon in pluricellular organisms and bacterial communities, where sender cells secrete chemical signals that activate specific pathways in distant receivers. Despite its importance, the engineering and investigation of spatiotemporal communication in artificial cell consortia remains underexplored. In this study, we present spatiotemporal communication between cellular-scale entities acting as both senders and receivers. The transmitted signals are leveraged to elicit conformational alterations within compartmentalized DNA structures. Specifically, sender entities control and generate diffusive chemical signals, namely, variations in pH, through the conversion of biomolecular inputs. In the receiver population, compartmentalized DNA nanostructures exhibit changes in conformation, transitioning between triplex and duplex assemblies, in response to this pH variation. We demonstrate the temporal regulation of activated DNA nanostructures through the coordinated action of two antagonistic sender populations. Furthermore, we illustrate the transient distance-dependent activation of the receivers, facilitated by sender populations situated at defined spatial locations. Collectively, our findings provide novel avenues for the design of artificial cell consortia endowed with programmable spatiotemporal dynamics through chemical communication.

摘要

细胞过程的时空编排是多细胞生物和细菌群落中普遍存在的现象,其中发送细胞分泌化学信号,激活远处接收细胞中的特定途径。尽管其很重要,但人工细胞聚集体中时空通信的工程设计和研究仍未得到充分探索。在本研究中,我们展示了作为发送者和接收者的细胞尺度实体之间的时空通信。所传输的信号被用于引发分隔的DNA结构内的构象改变。具体而言,发送实体通过生物分子输入的转换来控制并产生扩散性化学信号,即pH值变化。在接收群体中,分隔的DNA纳米结构会响应这种pH值变化,呈现构象变化,在三链体和双链体组装之间转变。我们通过两个相互拮抗的发送群体的协同作用,展示了激活的DNA纳米结构的时间调控。此外,我们还说明了位于特定空间位置的发送群体促进了接收者的瞬时距离依赖性激活。总体而言,我们的研究结果为设计通过化学通信具有可编程时空动态的人工细胞聚集体提供了新途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e68/11363350/d2db45ef9c4b/oc4c00702_0006.jpg

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