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基于染色体水平基因组组装分析,扩展的气味结合蛋白介导了寄生蜂 Baryscapus dioryctriae 对宿主线索的检测。

An expanded odorant-binding protein mediates host cue detection in the parasitic wasp Baryscapus dioryctriae basis of the chromosome-level genome assembly analysis.

机构信息

Jilin Provincial Key Laboratory of Animal Resource Conservation and Utilization, School of Life Sciences, Northeast Normal University, Changchun, 130024, China.

Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, 130024, China.

出版信息

BMC Biol. 2024 Sep 11;22(1):196. doi: 10.1186/s12915-024-01998-8.

DOI:10.1186/s12915-024-01998-8
PMID:39256805
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11389331/
Abstract

BACKGROUND

Baryscapus dioryctriae (Chalcidodea: Eulophidae) is a parasitic wasp that parasitizes the pupae of many Pyralidae members and has been used as a biological control agent against Dioryctria pests of pinecones.

RESULTS

This B. dioryctriae assembly has a genome size of 485.5 Mb with a contig N50 of 2.17 Mb, and scaffolds were assembled onto six chromosomes using Hi-C analysis, significantly increasing the scaffold N50 to 91.17 Mb, with more than 96.13% of the assembled bases located on chromosomes, and an analysis revealed that 94.73% of the BUSCO gene set. A total of 54.82% (279.27 Mb) of the assembly was composed of repetitive sequences and 24,778 protein-coding genes were identified. Comparative genomic analysis demonstrated that the chemosensory perception, genetic material synthesis, and immune response pathways were primarily enriched in the expanded genes. Moreover, the functional characteristics of an odorant-binding protein (BdioOBP45) with ovipositor-biased expression identified from the expanded olfactory gene families were investigated by the fluorescence competitive binding and RNAi assays, revealing that BdioOBP45 primarily binds to the D. abietella-induced volatile compounds, suggesting that this expanded OBP is likely involved in locating female wasp hosts and highlighting a direction for future research.

CONCLUSIONS

Taken together, this work not only provides new genomic sequences for the Hymenoptera systematics, but also the high-quality chromosome-level genome of B. dioryctriae offers a valuable foundation for studying the molecular, evolutionary, and parasitic processes of parasitic wasps.

摘要

背景

Baryscapus dioryctriae(膜翅目:长尾小蜂科)是一种寄生蜂,寄生在许多鳞翅目成员的蛹中,已被用作防治松球象害虫的生物防治剂。

结果

该 B. dioryctriae 组装基因组大小为 485.5 Mb,N50 为 2.17 Mb,使用 Hi-C 分析将支架组装到 6 条染色体上,显著提高了支架 N50 至 91.17 Mb,组装碱基的 96.13%以上位于染色体上,分析表明 94.73%的 BUSCO 基因集。组装体的总共有 54.82%(279.27 Mb)由重复序列组成,鉴定出 24778 个蛋白质编码基因。比较基因组分析表明,化学感觉感知、遗传物质合成和免疫反应途径主要富集在扩展基因中。此外,通过荧光竞争结合和 RNAi 测定研究了从扩展嗅觉基因家族中鉴定出的具有产卵器偏倚表达的气味结合蛋白(BdioOBP45)的功能特征,结果表明 BdioOBP45 主要与 D. abietella 诱导的挥发物结合,表明这种扩展的 OBP 可能参与定位雌性黄蜂宿主,并为未来的研究提供了一个方向。

结论

总之,这项工作不仅为膜翅目系统发育提供了新的基因组序列,而且 B. dioryctriae 的高质量染色体水平基因组为研究寄生蜂的分子、进化和寄生过程提供了有价值的基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c23c/11389331/1ea9dce65800/12915_2024_1998_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c23c/11389331/d1191fd5baad/12915_2024_1998_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c23c/11389331/430d7ae1dfdd/12915_2024_1998_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c23c/11389331/4e6abce93c55/12915_2024_1998_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c23c/11389331/52a5599e28ef/12915_2024_1998_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c23c/11389331/742ddaf51a46/12915_2024_1998_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c23c/11389331/1ea9dce65800/12915_2024_1998_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c23c/11389331/d1191fd5baad/12915_2024_1998_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c23c/11389331/430d7ae1dfdd/12915_2024_1998_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c23c/11389331/4e6abce93c55/12915_2024_1998_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c23c/11389331/52a5599e28ef/12915_2024_1998_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c23c/11389331/742ddaf51a46/12915_2024_1998_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c23c/11389331/1ea9dce65800/12915_2024_1998_Fig6_HTML.jpg

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本文引用的文献

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A chromosome-level genome assembly of the parasitoid wasp Eretmocerus hayati.寄生蜂 Eretmocerus hayati 的染色体水平基因组组装
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3
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Parasitoids as taxonomists: how does the parasitoid Chouioia cunea distinguish between a host and a non-host?作为分类学家的寄生蜂:周氏啮小蜂如何区分宿主和非宿主?
Pest Manag Sci. 2023 Nov;79(11):4547-4556. doi: 10.1002/ps.7656. Epub 2023 Aug 7.
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A chromosome scale assembly of the parasitoid wasp Venturia canescens provides insight into the process of virus domestication.寄生蜂白蛾周氏啮小蜂的染色体水平基因组组装为病毒驯化过程提供了新视角。
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