对历史样本进行测序可提供来自美国的鸡杯状病毒的完整编码序列。
Sequencing of historic samples provides complete coding sequences of chicken calicivirus from the United States.
作者信息
Goraichuk Iryna V, Davis James F, Afonso Claudio L, Suarez David L
机构信息
Exotic and Emerging Avian Viral Disease Research Unit, Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, ARS, USDA, Athens, Georgia, USA.
Georgia Poultry Laboratory Network, Gainesville, Georgia, USA.
出版信息
Microbiol Resour Announc. 2024 Oct 10;13(10):e0077724. doi: 10.1128/mra.00777-24. Epub 2024 Sep 12.
Abstract
Here, we report the coding-complete genomic sequences of two chicken caliciviruses from US poultry flocks in 2003 and 2004. They show the same genomic organization as that of other members of the genus and have the highest nucleotide identity (~88%) with strains from clinically normal chickens from Germany in 2004 and Netherlands in 2019.
摘要
在此，我们报告了2003年和2004年从美国家禽群中分离出的两种鸡杯状病毒的完整编码基因组序列。它们与该属其他成员具有相同的基因组结构，并且与2004年来自德国和2019年来自荷兰的临床正常鸡的毒株具有最高的核苷酸同一性（约88%）。
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2
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J Gen Virol. 2019 Nov;100(11):1469-1470. doi: 10.1099/jgv.0.001332.
3
Updated classification of norovirus genogroups and genotypes.诺如病毒基因群和基因型的更新分类。
J Gen Virol. 2019 Oct;100(10):1393-1406. doi: 10.1099/jgv.0.001318.
4
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