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揭示细胞死亡相关基因和免疫动力学对肺腺癌耐药性的影响:一种风险评分模型及功能见解

Unveiling the impact of cell death-related genes and immune dynamics on drug resistance in lung adenocarcinoma: a risk score model and functional insights.

作者信息

Xiao Yuanyuan, He Shancheng, Xie Baochang, Zhao Wenqi, Ji Dengliang

机构信息

Department of Critical Care Medicine, The Fifth People's Hospital of Ganzhou City, Ganzhou, 341000, China.

Ganzhou Institute of Liver Disease, Ganzhou, 341000, China.

出版信息

Discov Oncol. 2024 Sep 13;15(1):441. doi: 10.1007/s12672-024-01336-y.

Abstract

Lung adenocarcinoma (LUAD), characterized by its heterogeneity and complex pathogenesis, is the focus of this study which investigates the association between cell death-related genes and LUAD. Through machine learning, a risk score model was developed using the Coxboost rsf algorithm, demonstrating strong prognostic accuracy in both validation (GSE30219, GSE31210, GSE72094) and training (TCGA-LUAD) datasets with C-indices of 0.93, 0.67, 0.68, and 0.64, respectively. The study reveals that the expression of Keratin 18 (KRT18), a key cytoskeletal protein, varies across LUAD cell lines (DV-90, PC-9, A549) compared to normal bronchial epithelial cells (BEAS-2B), suggesting its potential role in LUAD's pathogenesis. Kaplan-Meier survival curves further validate the model, indicating longer survival in the low-risk group. A comprehensive analysis of gene expression, functional differences, immune infiltration, and mutations underscores significant variations between risk groups, highlighting the high-risk group's immunological dysfunction. This points to a more intricate tumor immune environment and the possibility of alternative therapeutic strategies. The study also delves into drug sensitivity, showing distinct responses between risk groups, underscoring the importance of risk stratification in treatment decisions for LUAD patients. Additionally, it explores KRT18's epigenetic regulation and its correlation with immune cell infiltration and immune regulatory molecules, suggesting KRT18's significant role in the tumor immune landscape. This research not only offers a valuable prognostic tool for LUAD but also illuminates the complex interplay between cell death-related genes, drug sensitivity, and immune infiltration, positioning KRT18 as a potential therapeutic or prognostic target to improve patient outcomes by personalizing LUAD treatment strategies.

摘要

肺腺癌(LUAD)具有异质性和复杂的发病机制,是本研究的重点,该研究调查了细胞死亡相关基因与LUAD之间的关联。通过机器学习,使用Coxboost rsf算法开发了一个风险评分模型,在验证数据集(GSE30219、GSE31210、GSE72094)和训练数据集(TCGA-LUAD)中均显示出很强的预后准确性,C指数分别为0.93、0.67、0.68和0.64。研究表明,与正常支气管上皮细胞(BEAS-2B)相比,关键细胞骨架蛋白角蛋白18(KRT18)在LUAD细胞系(DV-90、PC-9、A549)中的表达存在差异,表明其在LUAD发病机制中的潜在作用。Kaplan-Meier生存曲线进一步验证了该模型,表明低风险组的生存期更长。对基因表达、功能差异、免疫浸润和突变的综合分析强调了风险组之间的显著差异,突出了高风险组的免疫功能障碍。这表明肿瘤免疫环境更加复杂,以及存在替代治疗策略的可能性。该研究还深入探讨了药物敏感性,显示风险组之间存在明显差异,强调了风险分层在LUAD患者治疗决策中的重要性。此外,研究还探讨了KRT18的表观遗传调控及其与免疫细胞浸润和免疫调节分子的相关性,表明KRT18在肿瘤免疫格局中具有重要作用。这项研究不仅为LUAD提供了一个有价值的预后工具,还阐明了细胞死亡相关基因、药物敏感性和免疫浸润之间的复杂相互作用,将KRT18定位为一个潜在的治疗或预后靶点,通过个性化LUAD治疗策略来改善患者预后。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26df/11399484/6652ab78e3e9/12672_2024_1336_Fig1_HTML.jpg

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