Institute for Quantitative Biosciences, The University of Tokyo, Tokyo, Japan.
Karolinska Institutet, Department of Cell and Molecular Biology, Stockholm, Sweden.
Methods Mol Biol. 2025;2856:11-22. doi: 10.1007/978-1-0716-4136-1_2.
The Structural Maintenance of Chromosomes (SMC) protein complexes are DNA-binding molecular machines required to shape chromosomes into functional units and to safeguard the genome through cell division. These ring-shaped multi-subunit protein complexes, which are present in all kingdoms of life, achieve this by organizing chromosomes in three-dimensional space. Mechanistically, the SMC complexes hydrolyze ATP to either stably entrap DNA molecules within their lumen, or rapidly reel DNA into large loops, which allow them to link two stretches of DNA in cis or trans. In this chapter, the canonical structure of the SMC complexes is first introduced, followed by a description of the composition and general functions of the main types of eukaryotic and prokaryotic SMC complexes. Thereafter, the current model for how SMC complexes perform in vitro DNA loop extrusion is presented. Lastly, chromosome loop formation by SMC complexes is introduced, and how the DNA loop extrusion mechanism contributes to chromosome looping by SMC complexes in cells is discussed.
染色体结构维持(SMC)蛋白复合物是将染色体塑造成功能单位所必需的 DNA 结合分子机器,并通过细胞分裂来保护基因组。这些环形多亚基蛋白复合物存在于所有生命领域,通过在三维空间中组织染色体来实现这一点。从机制上讲,SMC 复合物通过水解 ATP 将 DNA 分子稳定地困在其管腔中,或快速地将 DNA 卷入大环中,从而允许它们在顺式或反式中将两个 DNA 链连接起来。在本章中,首先介绍了 SMC 复合物的典型结构,然后描述了主要类型的真核生物和原核生物 SMC 复合物的组成和一般功能。此后,介绍了 SMC 复合物在体外进行 DNA 环挤出的当前模型。最后,介绍了 SMC 复合物形成染色体环的过程,并讨论了 DNA 环挤出机制如何有助于 SMC 复合物在细胞中形成染色体环。