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类似 SMC 的瓦吉特系统可防止质粒转移到食纤维梭菌中。

SMC-like Wadjet system prevents plasmid transfer into Clostridium cellulovorans.

作者信息

Schöllkopf Aline I, Ehrenreich Armin, Liebl Wolfgang

机构信息

Chair of Microbiology, Technical University of Munich, TUM School of Life Sciences, Emil-Ramann-Str. 4, Freising, 85354, Germany.

出版信息

Appl Microbiol Biotechnol. 2025 Jul 23;109(1):170. doi: 10.1007/s00253-025-13551-w.

DOI:10.1007/s00253-025-13551-w
PMID:40699345
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12287153/
Abstract

This study demonstrates the impact of a Structure Maintenance of Chromosome (SMC)-like Wadjet system on the horizontal gene transfer of plasmids by conjugation to a recipient that naturally containing such a system for the first time. A Clostridium cellulovorans mutant with dramatically improved efficiency to receive plasmid DNA by conjugation was isolated and sequenced. Three spontaneous chromosomal deletions included a type II restriction-modification system, a putative CRISPR system, and a cluster of ORFs named jetABCD encoding a putative Wadjet system. Since nearly nothing is known about the role of naturally occurring Wadjet systems in their native host bacteria, markerless chromosomal deletion of jetABCD in the C. cellulovorans wildtype strain 743B was achieved and the effect on conjugative plasmid uptake was studied. The transconjugation frequency of the jetABCD mutant was increased by about five orders of magnitude compared to wildtype C. cellulovorans recipient cells. Bioinformatic analysis of genome sequences of the Bacillota phylum revealed near-complete mutually exclusive possession of either plasmids < 40 kb or jetABCD genes, indicating high efficiency of Wadjet systems in small plasmid prevention in bacteria. Importantly, the implications of this study go beyond the case of C. cellulovorans. Our study demonstrates that the eradication of Wadjet systems can dramatically improve the uptake of recombinant plasmids and thereby enhance genetic engineering of bacterial strains of interest for biotechnological applications. KEY POINTS: • Native Wadjet system inhibits plasmid transfer by conjugation in C. cellulovorans • Deleting jetABCD increased plasmid uptake by about five orders of magnitude • Possession of Wadjet systems efficiently block plasmid maintenance in Bacillota.

摘要

本研究首次证明了一种类似染色体结构维持(SMC)的瓦吉特系统对质粒通过接合转移至天然含有该系统的受体菌进行水平基因转移的影响。分离并测序了一株通过接合接收质粒DNA效率显著提高的纤维分解梭菌突变体。三个自发的染色体缺失包括一个II型限制修饰系统、一个假定的CRISPR系统以及一组名为jetABCD的开放阅读框,其编码一个假定的瓦吉特系统。由于对于天然存在的瓦吉特系统在其天然宿主细菌中的作用几乎一无所知,因此实现了纤维分解梭菌野生型菌株743B中jetABCD的无标记染色体缺失,并研究了其对接合性质粒摄取的影响。与野生型纤维分解梭菌受体细胞相比,jetABCD突变体的接合子转移频率提高了约五个数量级。对芽孢杆菌门基因组序列的生物信息学分析表明,小于40 kb的质粒或jetABCD基因几乎完全相互排斥,这表明瓦吉特系统在细菌中防止小质粒方面效率很高。重要的是,本研究的意义超出了纤维分解梭菌的情况。我们的研究表明,消除瓦吉特系统可以显著提高重组质粒的摄取,从而增强用于生物技术应用的目标细菌菌株的基因工程。要点:•天然瓦吉特系统抑制纤维分解梭菌中通过接合进行的质粒转移•删除jetABCD使质粒摄取增加约五个数量级•拥有瓦吉特系统可有效阻止芽孢杆菌门中的质粒维持

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e574/12287153/89fa562a14c5/253_2025_13551_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e574/12287153/9c441b9e23ad/253_2025_13551_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e574/12287153/64bbbdf3d566/253_2025_13551_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e574/12287153/48a5cd321943/253_2025_13551_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e574/12287153/71e2910c5867/253_2025_13551_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e574/12287153/2ba5cf1b24b1/253_2025_13551_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e574/12287153/89fa562a14c5/253_2025_13551_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e574/12287153/9c441b9e23ad/253_2025_13551_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e574/12287153/64bbbdf3d566/253_2025_13551_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e574/12287153/48a5cd321943/253_2025_13551_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e574/12287153/71e2910c5867/253_2025_13551_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e574/12287153/2ba5cf1b24b1/253_2025_13551_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e574/12287153/89fa562a14c5/253_2025_13551_Fig6_HTML.jpg

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本文引用的文献

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Markerless deletion of the putative type I and III restriction-modification systems in the cellulolytic bacterium Clostridium cellulovorans using a codBA-based counterselection technique.利用基于codBA的反选择技术对纤维素分解菌食纤维梭菌中假定的I型和III型限制修饰系统进行无标记缺失。
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Genomic and phenotypic polymorphism of Clostridium botulinum Group II strain Beluga through laboratory domestication.
通过实验室驯化研究白鲸型 II 群肉毒梭菌的基因组和表型多态性。
Int J Food Microbiol. 2025 Jan 2;426:110927. doi: 10.1016/j.ijfoodmicro.2024.110927. Epub 2024 Oct 1.
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Structural Maintenance of Chromosomes Complexes.染色体复合物的结构维护。
Methods Mol Biol. 2025;2856:11-22. doi: 10.1007/978-1-0716-4136-1_2.
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Anti-plasmid immunity: a key to pathogen success?抗质粒免疫:病原体成功的关键?
Future Microbiol. 2024;19(15):1269-1272. doi: 10.1080/17460913.2024.2389720. Epub 2024 Sep 4.
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Biochem Soc Trans. 2023 Aug 31;51(4):1571-1583. doi: 10.1042/BST20221395.
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Nucleic Acids Res. 2023 Apr 24;51(7):3288-3306. doi: 10.1093/nar/gkad130.
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Mol Cell. 2022 Dec 15;82(24):4727-4740.e6. doi: 10.1016/j.molcel.2022.11.015.