从婴儿配方奶粉中分离出的序列类型2255的基因组序列草图
Draft genome sequence of sequence type 2255 isolated from powdered infant formula.
作者信息
Patil Sonali, Wong Catherine W Y, Zhang Richard, Zhang Annika, Zhou Xinyi, Zhang Wei
机构信息
Department of Food Science and Nutrition, Institute for Food Safety and Health, Illinois Institute of Technology, Chicago, Illinois, USA.
Hinsdale Central High School, Hinsdale, Illinois, USA.
出版信息
Microbiol Resour Announc. 2024 Oct 10;13(10):e0070224. doi: 10.1128/mra.00702-24. Epub 2024 Sep 17.
Abstract
The draft genome sequence of a strain, DFPST-SP1, isolated from powdered infant formula in the United States is reported. The 5,216,828-bp draft genome comprises 46 contigs with 66.4× coverage and 36% GC content and was typed as sequence type 2255.
摘要
报道了从美国婴儿配方奶粉中分离出的一株菌株DFPST-SP1的基因组序列草图。该5,216,828碱基对的基因组草图包含46个重叠群，覆盖度为66.4倍，GC含量为36%，并被分型为序列型2255。
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本文引用的文献
1
Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications.开放获取的细菌群体基因组学：BIGSdb软件、PubMLST.org网站及其应用。
Wellcome Open Res. 2018 Sep 24;3:124. doi: 10.12688/wellcomeopenres.14826.1. eCollection 2018.
2
SKESA: strategic k-mer extension for scrupulous assemblies.SKESA：用于严谨组装的策略性 k--mer 扩展。
Genome Biol. 2018 Oct 4;19(1):153. doi: 10.1186/s13059-018-1540-z.
3
Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI.利用平均核苷酸同一性改进美国国立生物技术信息中心原核生物基因组的分类归属。
Int J Syst Evol Microbiol. 2018 Jul;68(7):2386-2392. doi: 10.1099/ijsem.0.002809. Epub 2018 May 24.
4
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
5
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
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