加拿大临床菌株的基因组序列草图
Draft genome sequences of clinical strains in Canada.
作者信息
Islam Md Rashedul, Adam Heather, Akochy Pierre-Marie, Sharma Meenu, McGurran Alisa, Soualhine Hafid
机构信息
National Reference Centre for Mycobacteriology, National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada.
Shared Health, Winnipeg, Manitoba, Canada.
出版信息
Microbiol Resour Announc. 2024 Oct 10;13(10):e0062224. doi: 10.1128/mra.00622-24. Epub 2024 Sep 19.
Abstract
is a rare pathogen causing tuberculosis in humans and presents a risk to public health. Here, we report the genome sequences of two strains. The genomes will assist in creating sequence-based tools for and serve as references for identification, surveillance, and epidemiological investigations.
摘要
是一种导致人类患结核病的罕见病原体，对公众健康构成风险。在此，我们报告了两株菌株的基因组序列。这些基因组将有助于创建基于序列的工具，并为鉴定、监测和流行病学调查提供参考。
相似文献
1
Draft genome sequences of clinical strains in Canada.加拿大临床菌株的基因组序列草图
Microbiol Resour Announc. 2024 Oct 10;13(10):e0062224. doi: 10.1128/mra.00622-24. Epub 2024 Sep 19.
2
Novel multiplex real-time PCR diagnostic assay for identification and differentiation of Mycobacterium tuberculosis, Mycobacterium canettii, and Mycobacterium tuberculosis complex strains.新型多重实时 PCR 诊断检测方法，用于鉴定和区分结核分枝杆菌、堪萨斯分枝杆菌和结核分枝杆菌复合菌株。
J Clin Microbiol. 2011 Feb;49(2):651-7. doi: 10.1128/JCM.01426-10. Epub 2010 Dec 1.
3
Decrypting the environmental sources of Mycobacterium canettii by high-throughput biochemical profiling.高通量生化特征分析揭示堪萨斯分枝杆菌的环境来源。
PLoS One. 2019 Sep 3;14(9):e0222078. doi: 10.1371/journal.pone.0222078. eCollection 2019.
4
High genetic diversity revealed by variable-number tandem repeat genotyping and analysis of hsp65 gene polymorphism in a large collection of "Mycobacterium canettii" strains indicates that the M. tuberculosis complex is a recently emerged clone of "M. canettii".通过可变数目串联重复序列基因分型以及对大量“卡内蒂分枝杆菌”菌株的hsp65基因多态性分析所揭示的高遗传多样性表明，结核分枝杆菌复合群是“卡内蒂分枝杆菌”最近出现的一个克隆。
J Clin Microbiol. 2004 Jul;42(7):3248-55. doi: 10.1128/JCM.42.7.3248-3255.2004.
5
Clinical Features of Mycobacterium canettii Infection: A Retrospective Study of 20 Cases Among French Soldiers and Relatives.卡内蒂分枝杆菌感染的临床特征：对20例法国士兵及其亲属的回顾性研究
Clin Infect Dis. 2019 Nov 13;69(11):2003-2010. doi: 10.1093/cid/ciz107.
6
Dry-heat inactivation of "Mycobacterium canettii".“卡内蒂分枝杆菌”的干热灭活
BMC Res Notes. 2017 Jun 9;10(1):201. doi: 10.1186/s13104-017-2522-z.
7
Study of the gyrB gene polymorphism as a tool to differentiate among Mycobacterium tuberculosis complex subspecies further underlines the older evolutionary age of 'Mycobacterium canettii'.将gyrB基因多态性作为区分结核分枝杆菌复合群亚种的工具进行研究，进一步凸显了“卡内蒂分枝杆菌”更古老的进化年代。
Mol Cell Probes. 2006 Jun-Aug;20(3-4):182-90. doi: 10.1016/j.mcp.2005.11.008. Epub 2006 Mar 6.
8
Infection of Adipose Tissues.脂肪组织感染。
Front Cell Infect Microbiol. 2017 May 17;7:189. doi: 10.3389/fcimb.2017.00189. eCollection 2017.
9
The impact of frequently neglected model violations on bacterial recombination rate estimation: a case study in Mycobacterium canettii and Mycobacterium tuberculosis.频繁被忽视的模型违反情况对细菌重组率估计的影响：以卡内蒂分枝杆菌和结核分枝杆菌为例的研究
G3 (Bethesda). 2022 May 6;12(5). doi: 10.1093/g3journal/jkac055.
10
ESX-1-Independent Horizontal Gene Transfer by Mycobacterium tuberculosis Complex Strains.结核分枝杆菌复合群菌株的 ESX-1 独立水平基因转移。
mBio. 2021 May 18;12(3):e00965-21. doi: 10.1128/mBio.00965-21.
本文引用的文献
1
A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex.从埃塞俄比亚分离到的与结核分枝杆菌复合体亲缘关系密切的光滑型结核分枝杆菌。
Nat Commun. 2023 Nov 18;14(1):7519. doi: 10.1038/s41467-023-42755-9.
2
Whole genome sequencing-based identification of human tuberculosis caused by animal-lineage .基于全基因组测序的动物源性人结核分枝杆菌的鉴定
J Clin Microbiol. 2023 Nov 21;61(11):e0026023. doi: 10.1128/jcm.00260-23. Epub 2023 Oct 25.
3
Proksee: in-depth characterization and visualization of bacterial genomes.Proksee：细菌基因组的深入特征描述和可视化。
Nucleic Acids Res. 2023 Jul 5;51(W1):W484-W492. doi: 10.1093/nar/gkad326.
4
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update.Galaxy 平台：用于可访问、可重复和协作的生物医学分析：2022 更新。
Nucleic Acids Res. 2022 Jul 5;50(W1):W345-W351. doi: 10.1093/nar/gkac247.
5
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.RefSeq：通过蛋白质家族模型编纂扩展原核生物基因组注释管道的覆盖范围。
Nucleic Acids Res. 2021 Jan 8;49(D1):D1020-D1028. doi: 10.1093/nar/gkaa1105.
6
Antibiotic resistance prediction for from genome sequence data with Mykrobe.使用Mykrobe从基因组序列数据预测抗生素耐药性。
Wellcome Open Res. 2019 Dec 2;4:191. doi: 10.12688/wellcomeopenres.15603.1. eCollection 2019.
7
Decrypting the environmental sources of Mycobacterium canettii by high-throughput biochemical profiling.高通量生化特征分析揭示堪萨斯分枝杆菌的环境来源。
PLoS One. 2019 Sep 3;14(9):e0222078. doi: 10.1371/journal.pone.0222078. eCollection 2019.
8
Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs.整合信息学工具和便携式测序技术，用于快速检测抗结核药物耐药性。
Genome Med. 2019 Jun 24;11(1):41. doi: 10.1186/s13073-019-0650-x.
9
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.高通量 ANI 分析 9 万余组原核基因组揭示了清晰的物种界限。
Nat Commun. 2018 Nov 30;9(1):5114. doi: 10.1038/s41467-018-07641-9.
10
QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
Zotero 插件