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来自热带西太平洋海山的泡泡糖珊瑚(八放珊瑚亚纲:珊瑚科)的完整线粒体基因组。

The complete mitochondrial genome of the bubble-gum coral (Octocorallia: Coralliidae) from the seamount in the tropical Western Pacific.

作者信息

Li Junyuan, Xu Kuidong, Li Yang

机构信息

College of Agriculture and Bioengineering, Taizhou Vocational College of Science and Technology, Taizhou, China.

Laboratory of Marine Organism Taxonomy and Phylogeny, Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.

出版信息

Mitochondrial DNA B Resour. 2024 Sep 18;9(9):1243-1247. doi: 10.1080/23802359.2024.2405531. eCollection 2024.

Abstract

The complete mitochondrial genome of Li et al. 2021, a deep-sea gorgonian inhabiting at 858 m in Caroline Ridge, was obtained in this study. The length of the mitochondrial genome is 19,018 bp with 14 protein coding genes, one transfer RNA (tRNA-Met) and two ribosomal RNA genes contained in this circular molecule. Phylogenetic analysis indicated that and Bayer, 1993 were two closely related species, and a total of 26 mutational sites (four nonsynonymous mutations included) can be detected between their mitochondrial genomes. This exhibits a case that mitochondrial genomes can be applied to differentiate closely related species in gorgonians. The phylogenetic tree constructed with mitochondrial genomes showed that the families in Octocorallia are reciprocally monophyletic, provided that the family names were revised according to the systematic revision of Octocorallia guided by phylogenomics. However, the relationships of the families within each order were different between the previous phylogenomic work and ours. Integrating mitochondrial genomes from a wider array of Octocorallia families is essential for a more accurate comparison of phylogenies derived from nuclear and mitochondrial sequences in future study.

摘要

本研究获得了李等人于2021年在卡罗琳海岭858米深处发现的一种深海柳珊瑚的完整线粒体基因组。该线粒体基因组长度为19,018碱基对,这个环状分子包含14个蛋白质编码基因、一个转运RNA(tRNA-Met)和两个核糖体RNA基因。系统发育分析表明,[此处原文缺失相关物种名]与拜尔于1993年发现的[此处原文缺失相关物种名]是两个亲缘关系密切的物种,在它们的线粒体基因组之间总共可检测到26个突变位点(包括四个非同义突变)。这显示出线粒体基因组可用于区分柳珊瑚中亲缘关系密切的物种的一个实例。用线粒体基因组构建的系统发育树表明,八放珊瑚亚纲中的各个科是相互单系的,前提是根据系统发育基因组学指导下的八放珊瑚亚纲系统修订来修改科名。然而,在之前的系统发育基因组学研究和我们的研究中,每个目的各科之间的关系有所不同。在未来的研究中,整合来自更广泛的八放珊瑚亚纲各科的线粒体基因组对于更准确地比较源自核序列和线粒体序列的系统发育至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/086e/11411558/56f5cdbcd090/TMDN_A_2405531_F0001_C.jpg

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