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探讨菊苣中的 GRAS 基因家族:特征、进化关系以及对非生物胁迫的表达分析。

Exploring the GRAS gene family in Taraxacum kok-saghyz Rodin:characterization, evolutionary relationships, and expression analyses in response to abiotic stresses.

机构信息

Anhui Agricultural University, School of Life Sciences, Hefei, Anhui, China.

Anhui Agricultural University, School of Life Sciences, Hefei, Anhui, China; Guangdong ZhongXun Agri-science Corporation, Huizhou, Guangdong, China.

出版信息

Biochem Biophys Res Commun. 2024 Nov 12;733:150693. doi: 10.1016/j.bbrc.2024.150693. Epub 2024 Sep 16.

Abstract

The GRAS gene is an important specific transcription factor in plants, which has multiple functions such as signal transduction, cell morphogenesis and stress response. Although it is widely distributed in plants and has been characterized in several species, however, information about the GRAS family in Taraxacum kok-saghyz Rodin remains unknown. Here, TkGRAS family members were identified and analyzed for molecular characterization, tissue expression patterns and induced expression patterns. A total of 64 GRAS family members were identified at the genome-wide level, which could be categorized into 14 subfamilies by phylogenetic analysis. Most TkGRASs were intronless and had essentially the same gene structure in the same subfamily. Meanwhile, there were multiple response elements found in the promoters of TkGRASs. Tissue expression patterns and induced expression patterns showed that TkGRASs were expressed in different tissues and induced by abiotic stresses. Notably, the expression level of TkGRAS20 was up-regulated under different stresses, suggesting that this gene plays a pivotal role in the stress response. TkGRAS20 showed transcriptional activity in yeast cells and localized in the nucleus and plasma membrane. In conclusion, our study provided valuable insights into the genetic mechanisms underlying stress tolerance in TKS, and several key genes may be used for genetic breeding to improve stress tolerance.

摘要

GRAS 基因是植物中重要的特异转录因子,具有信号转导、细胞形态发生和应激响应等多种功能。尽管它在植物中广泛分布,并在几个物种中得到了特征描述,但是 Taraxacum kok-saghyz Rodin 中的 GRAS 家族的信息仍然未知。在这里,鉴定并分析了 TkGRAS 家族成员的分子特征、组织表达模式和诱导表达模式。在全基因组水平上共鉴定出 64 个 GRAS 家族成员,通过系统发育分析可分为 14 个亚家族。大多数 TkGRAS 是无内含子的,在同一亚家族中具有基本相同的基因结构。同时,在 TkGRAS 启动子中发现了多个响应元件。组织表达模式和诱导表达模式表明,TkGRASs 在不同组织中表达,并受到非生物胁迫的诱导。值得注意的是,不同胁迫下 TkGRAS20 的表达水平上调,表明该基因在应激响应中发挥关键作用。TkGRAS20 在酵母细胞中具有转录活性,并且定位于细胞核和质膜。总之,我们的研究为 TKS 中应激耐受的遗传机制提供了有价值的见解,并且一些关键基因可能用于遗传育种以提高应激耐受性。

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