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从巴基斯坦禽粪中分离出的高危ST10的全基因组序列。

Complete genome sequence of a high-risk ST10 isolated from avian feces in Pakistan.

作者信息

Lee Jung Hun, Tareen Abdul Rauf, Kim Nam-Hoon, Jeong Chanyeong, Kang Byeonghyeon, Lee Gwangje, Kim Dae-Wi, Zahra Rabaab, Lee Sang Hee

机构信息

National Leading Research Laboratory of Drug Resistance Proteomics, Department of Biological Sciences, Myongji University, Yongin, South Korea.

Department of Microbiology, Quaid-i-Azam University, Islamabad, Pakistan.

出版信息

Microbiol Resour Announc. 2024 Nov 12;13(11):e0076924. doi: 10.1128/mra.00769-24. Epub 2024 Oct 9.

DOI:10.1128/mra.00769-24
PMID:39382271
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11556057/
Abstract

We present the complete genome sequence of strain PEC1009 isolated from avian feces in Pakistan. The strain belongs to sequence type (ST) 10, a high-risk clone. The strain possesses two plasmids, and various plasmid-borne antibiotic resistance genes and chromosome-borne virulence factor genes were identified in its genome.

摘要

我们公布了从巴基斯坦禽类粪便中分离出的PEC1009菌株的完整基因组序列。该菌株属于序列型（ST）10，是一种高风险克隆。该菌株拥有两个质粒，并且在其基因组中鉴定出了各种质粒携带的抗生素抗性基因和染色体携带的毒力因子基因。

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本文引用的文献

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CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database.CARD 2023：在全面抗生素耐药性数据库中进行扩展的策展、对机器学习的支持以及耐药组预测。
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Genomics and pathotypes of the many faces of Escherichia coli.大肠杆菌的基因组学和病原体类型。
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Antibiotic resistance in Pakistan: a systematic review of past decade.巴基斯坦的抗生素耐药性：过去十年的系统综述。
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Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications.开放获取的细菌群体基因组学：BIGSdb软件、PubMLST.org网站及其应用。
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Corrigendum: serotyping of from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages.勘误：从短读长数据中进行血清型分型仅鉴定出有限的新型O位点，但在致病谱系内部和之间，O:H血清型组合具有广泛的多样性。
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