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一个用于白细胞分类的大型多焦点数据集。

A large multi-focus dataset for white blood cell classification.

机构信息

Noul Co., Ltd., Yongin-si, Gyeonggi-do, 16942, Republic of Korea.

Department of Medical Device Management and Research, Samsung Advanced Institute for Health Sciences and Technology, Sungkyunkwan University, 115 Irwon-ro, Gangnam-gu, Seoul, 06355, Republic of Korea.

出版信息

Sci Data. 2024 Oct 9;11(1):1106. doi: 10.1038/s41597-024-03938-1.

DOI:10.1038/s41597-024-03938-1
PMID:39384810
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11464576/
Abstract

The White Blood Cell (WBC) differential test ranks as the second most frequently performed diagnostic assay. It requires manual confirmation of the peripheral blood smear by experts to identify signs of abnormalities. Automated digital microscopy has emerged as a solution to reduce this labor-intensive process and improve efficiency. Several publicly available datasets provide various WBC subtypes of differing quality and resolution. These datasets have contributed to advancing WBC classification using machine learning techniques. However, digital microscopy of blood cells with high magnification often requires a wider depth of field, posing challenges for automatic digital microscopy that necessitates capturing multiple stacks of focal planes to obtain complete images of specific blood cells. Our dataset provides 25,773 image stacks from 72 patients. The image labels consist of 18 classes encompassing normal and abnormal cells, with two experts reviewing each label. Each image includes 10 z-stacks of cropped 200 by 200 pixel images, captured using a 50X microscope with 400 nm intervals. This study presents a comprehensive multi-focus dataset for WBC classification.

摘要

白细胞(WBC)分类检测是仅次于最常进行的诊断检测项目。该检测需要专家手动确认外周血涂片,以识别异常迹象。自动化数字显微镜的出现解决了这个劳动密集型过程,并提高了效率。有几个公开的数据集提供了不同质量和分辨率的各种 WBC 亚型。这些数据集为使用机器学习技术进行 WBC 分类做出了贡献。然而,高倍放大的血细胞数字显微镜通常需要更大的景深,这对自动数字显微镜提出了挑战,因为自动数字显微镜需要捕获多个焦平面的堆栈,以获得特定血细胞的完整图像。我们的数据集提供了来自 72 名患者的 25,773 个图像堆栈。图像标签包含 18 个类别,涵盖正常和异常细胞,每个标签都由两位专家进行审查。每个图像包括 10 个裁剪为 200x200 像素的 z 堆叠图像,使用 50X 显微镜以 400nm 的间隔拍摄。本研究提出了一个用于 WBC 分类的综合多焦点数据集。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/11464576/437b086d6d5d/41597_2024_3938_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/11464576/40856f659091/41597_2024_3938_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/11464576/437b086d6d5d/41597_2024_3938_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/11464576/40856f659091/41597_2024_3938_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/11464576/437b086d6d5d/41597_2024_3938_Fig2_HTML.jpg

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本文引用的文献

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Embedded-deep-learning-based sample-to-answer device for on-site malaria diagnosis.用于现场疟疾诊断的基于嵌入式深度学习的样本到答案设备。
Front Bioeng Biotechnol. 2024 Jul 19;12:1392269. doi: 10.3389/fbioe.2024.1392269. eCollection 2024.
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Analytical performance of the digital morphology analyzer Sysmex DI-60 for body fluid cell differential counts.Sysmex DI-60 数字形态分析仪在体液细胞分类计数中的分析性能。
PLoS One. 2023 Jul 27;18(7):e0288551. doi: 10.1371/journal.pone.0288551. eCollection 2023.
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A high-resolution large-scale dataset of pathological and normal white blood cells.
一个高分辨率的大规模病理性和正常白细胞数据集。
Sci Data. 2023 Jul 19;10(1):466. doi: 10.1038/s41597-023-02378-7.
4
Does training with blurred images bring convolutional neural networks closer to humans with respect to robust object recognition and internal representations?就稳健的目标识别和内部表征而言,使用模糊图像进行训练是否会使卷积神经网络在与人类的比较中更接近人类?
Front Psychol. 2023 Feb 15;14:1047694. doi: 10.3389/fpsyg.2023.1047694. eCollection 2023.
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A deep learning model for detection of leukocytes under various interference factors.一种用于检测各种干扰因素下白细胞的深度学习模型。
Sci Rep. 2023 Feb 7;13(1):2160. doi: 10.1038/s41598-023-29331-3.
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Content aware multi-focus image fusion for high-magnification blood film microscopy.用于高倍血膜显微镜检查的内容感知多聚焦图像融合
Biomed Opt Express. 2022 Jan 27;13(2):1005-1016. doi: 10.1364/BOE.448280. eCollection 2022 Feb 1.
7
Digital Morphology Analyzer Sysmex DI-60 vs. Manual Counting for White Blood Cell Differentials in Leukopenic Samples: A Comparative Assessment of Risk and Turnaround Time.Sysmex DI-60 全自动数字形态学分析仪与人工镜检在白细胞减少症样本中的白细胞分类比较:风险和周转时间的评估。
Ann Lab Med. 2022 Jul 1;42(4):398-405. doi: 10.3343/alm.2022.42.4.398.
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Deep learning-based single-shot autofocus method for digital microscopy.基于深度学习的数字显微镜单次自动对焦方法
Biomed Opt Express. 2021 Dec 14;13(1):314-327. doi: 10.1364/BOE.446928. eCollection 2022 Jan 1.
9
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J Healthc Eng. 2021 Sep 13;2021:1615192. doi: 10.1155/2021/1615192. eCollection 2021.