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用于串行晶体学的微流体固定靶中的逆流扩散结晶和长期晶体保存

counter-diffusion crystallization and long-term crystal preservation in microfluidic fixed targets for serial crystallography.

作者信息

Liu Zhongrui, Gu Kevin, Shelby Megan, Roy Debdyuti, Muniyappan Srinivasan, Schmidt Marius, Narayanasamy Sankar Raju, Coleman Matthew, Frank Matthias, Kuhl Tonya L

机构信息

Department of Materials Science and Engineering University of California Davis Davis CA95616 USA.

Department of Chemical Engineering University of California Davis Davis CA95616 USA.

出版信息

J Appl Crystallogr. 2024 Sep 25;57(Pt 5):1539-1550. doi: 10.1107/S1600576724007544. eCollection 2024 Oct 1.

DOI:10.1107/S1600576724007544
PMID:39387069
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11460377/
Abstract

Compared with batch and vapor diffusion methods, counter diffusion can generate larger and higher-quality protein crystals yielding improved diffraction data and higher-resolution structures. Typically, counter-diffusion experiments are conducted in elongated chambers, such as glass capillaries, and the crystals are either directly measured in the capillary or extracted and mounted at the X-ray beamline. Despite the advantages of counter-diffusion protein crystallization, there are few fixed-target devices that utilize counter diffusion for crystallization. In this article, different designs of user-friendly counter-diffusion chambers are presented which can be used to grow large protein crystals in a 2D polymer microfluidic fixed-target chip. Methods for rapid chip fabrication using commercially available thin-film materials such as Mylar, propyl-ene and Kapton are also detailed. Rules of thumb are provided to tune the nucleation and crystal growth to meet users' needs while minimizing sample consumption. These designs provide a reliable approach to forming large crystals and maintaining their hydration for weeks and even months. This allows ample time to grow, select and preserve the best crystal batches before X-ray beam time. Importantly, the fixed-target microfluidic chip has a low background scatter and can be directly used at beamlines without any crystal handling, enabling crystal quality to be preserved. The approach is demonstrated with serial diffraction of photoactive yellow protein, yielding 1.32 Å resolution at room temperature. Fabrication of this standard microfluidic chip with commercially available thin films greatly simplifies fabrication and provides enhanced stability under vacuum. These advances will further broaden microfluidic fixed-target utilization by crystallographers.

摘要

与批量和气相扩散方法相比,逆流扩散能够生成更大且质量更高的蛋白质晶体,从而产生改进的衍射数据和更高分辨率的结构。通常,逆流扩散实验在细长的腔室中进行,如玻璃毛细管,晶体要么在毛细管中直接测量,要么被提取并安装在X射线束线上。尽管逆流扩散蛋白质结晶有诸多优点,但很少有固定靶装置利用逆流扩散进行结晶。在本文中,展示了不同设计的用户友好型逆流扩散腔室,其可用于在二维聚合物微流控固定靶芯片中生长大尺寸蛋白质晶体。还详细介绍了使用诸如聚酯薄膜、丙烯和聚酰亚胺等市售薄膜材料进行快速芯片制造的方法。提供了经验法则,以调节成核和晶体生长,满足用户需求,同时将样品消耗降至最低。这些设计提供了一种可靠方法来形成大晶体,并在数周甚至数月内保持其水合状态。这使得在X射线束使用时间之前有充足时间来生长、选择和保存最佳晶体批次。重要的是,固定靶微流控芯片具有低背景散射,无需任何晶体处理即可直接在束线上使用,从而能够保持晶体质量。通过光活性黄色蛋白的系列衍射证明了该方法,在室温下获得了1.32 Å的分辨率。用市售薄膜制造这种标准微流控芯片极大地简化了制造过程,并在真空下提供了更高的稳定性。这些进展将进一步拓宽晶体学家对微流控固定靶的利用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/541eddfe70bf/j-57-01539-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/bc621c3bab99/j-57-01539-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/ef3988e70723/j-57-01539-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/373e1fbb1058/j-57-01539-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/45a6cb310c2e/j-57-01539-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/3ed95fa62597/j-57-01539-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/e31250bf35c0/j-57-01539-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/e25ec664ab8e/j-57-01539-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/e1a03c0359f1/j-57-01539-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/541eddfe70bf/j-57-01539-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/bc621c3bab99/j-57-01539-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/ef3988e70723/j-57-01539-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/373e1fbb1058/j-57-01539-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/45a6cb310c2e/j-57-01539-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/3ed95fa62597/j-57-01539-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/e31250bf35c0/j-57-01539-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/e25ec664ab8e/j-57-01539-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/e1a03c0359f1/j-57-01539-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d50/11460377/541eddfe70bf/j-57-01539-fig9.jpg

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