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大豆中基因家族的全基因组鉴定与组织表达模式分析（）

Genome-wide identification and tissue expression pattern analysis of gene family in soybean ().

作者信息

Li Huanli, Zhang Xiaoling, Yang Qinli, Shangguan Xiaoxia, Ma Yanbin

机构信息

Cotton Research Institute of Shanxi Agricultural University, Yuncheng, China.

出版信息

Front Plant Sci. 2024 Sep 26;15:1487092. doi: 10.3389/fpls.2024.1487092. eCollection 2024.

DOI:10.3389/fpls.2024.1487092
PMID:39391776
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11465927/
Abstract

The terpene synthase (TPS) plays a pivotal roles in plant growth, development, and enhancing resilience against environmental stresses. Despite this, the bioinformatics analysis of the family gene in soybean () is lacking. In this study, we investigated 36 GmTPS members in soybean, exhibiting a diverse range of protein lengths, spanning from 144 to 835 amino acids. A phylogenetic tree was constructed from these genes revealed a classification into five distinct subgroups: Group1, Group2, Group3, Group4 and Group5. Notably, within each subgroup, we identified the motifs of GmTPS proteins were similar, although variations existed among different subfamilies. Gene duplication events analysis demonstrated that genes expand differently in , and . Among, both tandem duplication and Whole genome duplication contributive to the expansion of genes in , and Whole genome duplication played a major role. Moreover, the cis-element analysis suggested that is related to hormone signals, plant growth and development and environmental stress. Yeast two-hybrid (Y2H) assay results indicated TPS protein may form heterodimer to function, or may form complex with P450 proteins to function. RNA-seq results revealed a higher expression of most genes in flowers, suggesting their potential contribution to flower development. Collectively, these findings offer a provide a holistic knowledge of the TPS gene family in soybean and will facilitate further characterization of effectively.

摘要

萜类合酶（TPS）在植物生长、发育以及增强对环境胁迫的抗性中发挥着关键作用。尽管如此，大豆（）中该家族基因的生物信息学分析仍较为缺乏。在本研究中，我们对大豆中的36个GmTPS成员进行了研究，这些成员的蛋白质长度各异，从144个氨基酸到835个氨基酸不等。由这些基因构建的系统发育树显示可分为五个不同的亚组：第1组、第2组、第3组、第4组和第5组。值得注意的是，在每个亚组内，我们发现GmTPS蛋白的基序相似，尽管不同亚家族之间存在差异。基因复制事件分析表明，基因在、和中的扩增方式不同。其中，串联复制和全基因组复制都对基因在中的扩增有贡献，且全基因组复制起主要作用。此外，顺式作用元件分析表明与激素信号、植物生长发育及环境胁迫有关。酵母双杂交（Y2H）试验结果表明，TPS蛋白可能形成异源二聚体发挥功能，或者可能与P450蛋白形成复合物发挥功能。RNA测序结果显示，大多数基因在花中的表达较高，表明它们对花发育有潜在贡献。总的来说，这些发现为大豆中TPS基因家族提供了全面的认识，并将有助于进一步有效地对进行表征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/7f4f6139f102/fpls-15-1487092-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/829cb801e3f5/fpls-15-1487092-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/51761a041725/fpls-15-1487092-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/0ad32afdb482/fpls-15-1487092-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/b2783b45003a/fpls-15-1487092-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/3ea50a89d122/fpls-15-1487092-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/c747101ae454/fpls-15-1487092-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/e6fe9d74ed90/fpls-15-1487092-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/7f4f6139f102/fpls-15-1487092-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/829cb801e3f5/fpls-15-1487092-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/51761a041725/fpls-15-1487092-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/0ad32afdb482/fpls-15-1487092-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/b2783b45003a/fpls-15-1487092-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/3ea50a89d122/fpls-15-1487092-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/c747101ae454/fpls-15-1487092-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/e6fe9d74ed90/fpls-15-1487092-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ffe/11465927/7f4f6139f102/fpls-15-1487092-g008.jpg

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