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分子动力学揭示了与BAR相关的膜重塑的关键步骤。

Molecular Dynamics Reveal Key Steps in BAR-Related Membrane Remodeling.

作者信息

Song Shenghan, Li Tongtong, Stevens Amy O, Shorty Temair, He Yi

机构信息

Department of Chemistry & Chemical Biology, The University of New Mexico, Albuquerque, NM 87131, USA.

Translational Informatics Division, Department of Internal Medicine, The University of New Mexico, Albuquerque, NM 87131, USA.

出版信息

Pathogens. 2024 Oct 15;13(10):902. doi: 10.3390/pathogens13100902.

Abstract

Endocytosis plays a complex role in pathogen-host interactions. It serves as a pathway for pathogens to enter the host cell and acts as a part of the immune defense mechanism. Endocytosis involves the formation of lipid membrane vesicles and the reshaping of the cell membrane, a task predominantly managed by proteins containing BAR (Bin1/Amphiphysin/yeast RVS167) domains. Insights into how BAR domains can remodel and reshape cell membranes provide crucial information on infections and can aid the development of treatment. Aiming at deciphering the roles of the BAR dimers in lipid membrane bending and remodeling, we conducted extensive all-atom molecular dynamics simulations and discovered that the presence of helix kinks divides the BAR monomer into two segments-the "arm segment" and the "core segment"-which exhibit distinct movement patterns. Contrary to the prior hypothesis of BAR domains working as a rigid scaffold, we found that it functions in an "Arms-Hands" mode. These findings enhance the understanding of endocytosis, potentially advancing research on pathogen-host interactions and aiding in the identification of new treatment strategies targeting BAR domains.

摘要

内吞作用在病原体与宿主的相互作用中起着复杂的作用。它是病原体进入宿主细胞的途径,也是免疫防御机制的一部分。内吞作用涉及脂膜囊泡的形成和细胞膜的重塑,这一任务主要由含有BAR(Bin1/Amphiphysin/酵母RVS167)结构域的蛋白质来完成。深入了解BAR结构域如何重塑细胞膜,可为感染提供关键信息,并有助于治疗方法的开发。为了解析BAR二聚体在脂膜弯曲和重塑中的作用,我们进行了广泛的全原子分子动力学模拟,发现螺旋扭结的存在将BAR单体分为两个部分——“臂部片段”和“核心片段”,它们表现出不同的运动模式。与之前认为BAR结构域作为刚性支架发挥作用的假设相反,我们发现它以“臂-手”模式发挥作用。这些发现增进了对内吞作用的理解,有可能推动病原体与宿主相互作用的研究,并有助于确定针对BAR结构域的新治疗策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79bc/11510478/c24eaf7d4b69/pathogens-13-00902-g001.jpg

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