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定量描述两种球形蛋白质在二元混合物中与葡聚糖 T70 的非特异性相互作用。

Quantitative characterization of non-specific interaction of two globular proteins with Dextran T70 in a binary mixture.

机构信息

Room G20, Department of Chemistry, Obafemi Awolowo University, Ile-Ife, Nigeria.

出版信息

Eur Biophys J. 2024 Nov;53(7-8):465-472. doi: 10.1007/s00249-024-01727-7. Epub 2024 Oct 25.

DOI:10.1007/s00249-024-01727-7
PMID:39455448
Abstract

In a bid to quantify the contribution of molecular structure to non-specific interactions leading to functionally important structural changes in cellular processes, the self-interaction of dextran-T70 (DT70) and its interaction with each of bovine serum albumin (BSA) and ovomucoid trypsin inhibitor (OVO) were studied at pH 7.4 between 5 and 37 °C. The dependences of the apparent molecular weight of each of BSA, OVO and DT70 on the concentration of DT70 were independent of temperature. The activity coefficient of the interaction of each species on DT70 concentration was also independent of temperature. The change in activity coefficient was however dependent on the molecular structure and size of the interacting species. The energy of insertion of each macromolecule in DT70 increased in the order DT70 > BSA > OVO. These findings show that although the enthalpic contribution is negligible, the extent of the entropic contribution to the macromolecular activity coefficient of interaction is chiefly the consequence of the exclusion volume of the interacting macromolecules.

摘要

为了量化分子结构对非特异性相互作用的贡献,从而导致细胞过程中功能重要的结构变化,在 pH 7.4 下,研究了葡聚糖-T70(DT70)的自相互作用及其与牛血清白蛋白(BSA)和卵类粘蛋白胰蛋白酶抑制剂(OVO)的相互作用,温度范围为 5 至 37°C。BSA、OVO 和 DT70 的表观分子量随 DT70 浓度的变化与温度无关。每种物质与 DT70 浓度相互作用的活度系数也与温度无关。然而,活度系数的变化取决于相互作用物质的分子结构和大小。每个大分子在 DT70 中的插入能按 DT70 > BSA > OVO 的顺序增加。这些发现表明,尽管焓贡献可以忽略不计,但对相互作用的大分子活度系数的熵贡献的程度主要是由于相互作用的大分子的排除体积的结果。

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本文引用的文献

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Macromolecular Crowding, Phase Separation, and Homeostasis in the Orchestration of Bacterial Cellular Functions.大分子拥挤、相分离和内稳态在细菌细胞功能的协调中的作用。
Chem Rev. 2024 Feb 28;124(4):1899-1949. doi: 10.1021/acs.chemrev.3c00622. Epub 2024 Feb 8.
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The influence of entropic crowding in cell monolayers.细胞单层中熵拥挤的影响。
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Macromolecular Crowding Is More than Hard-Core Repulsions.大分子拥挤效应不止于硬核排斥作用。
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Smaller molecules crowd better: Crowder size dependence revealed by single-molecule FRET studies and depletion force modeling analysis.小分子拥挤得更好:通过单分子 FRET 研究和耗尽力建模分析揭示的拥挤剂大小依赖性。
J Chem Phys. 2021 Apr 21;154(15):155101. doi: 10.1063/5.0045492.
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Understanding Conformational Entropy in Small Molecules.理解小分子中的构象熵。
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Carbohydrate-Based Macromolecular Crowding-Induced Stabilization of Proteins: Towards Understanding the Significance of the Size of the Crowder.基于碳水化合物的大分子拥挤稳定蛋白质:理解拥挤剂大小的意义。
Biomolecules. 2019 Sep 12;9(9):477. doi: 10.3390/biom9090477.
8
Quantitative characterization of the concentration-dependent interaction between molecules of Dextran 70 in aqueous solution: Measurement and analysis in the context of thermodynamic and compressible sphere models.定量描述水溶液中葡聚糖 70 分子间浓度依赖性相互作用:在热力学和可压缩球体模型的背景下进行测量和分析。
Biopolymers. 2019 Oct;110(10):e23284. doi: 10.1002/bip.23284. Epub 2019 May 6.
9
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Eur Biophys J. 2019 Mar;48(2):189-202. doi: 10.1007/s00249-019-01345-8. Epub 2019 Jan 11.
10
Protein-protein interactions in a crowded environment.拥挤环境中的蛋白质-蛋白质相互作用。
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