Section on Physical Biochemistry, Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, U.S. Department of Health and Human Services, Bethesda, Maryland 20892, USA.
J Phys Chem B. 2011 Sep 29;115(38):11261-8. doi: 10.1021/jp2049266. Epub 2011 Aug 31.
The interaction among each of three dilute "tracer" proteins (bovine serum albumin, superoxide dismutase, and ovomucoid) at a concentration of 2 mg/mL and each of two "crowder" proteins (ovomucoid and BSA) at concentrations up to 100 mg/mL was characterized by analysis of dependence of the equilibrium gradients of both tracer and crowder upon the concentration of crowder. The equilibrium gradients of both crowder proteins were found to be independent of temperature over the range 5-37 °C. The equilibrium gradients of tracer BSA and ovomucoid in the complementary crowder species were likewise found to be independent of temperature over this range, indicating that interaction among these tracers and crowders is predominantly repulsive and essentially entirely entropic in nature. The equilibrium gradient of tracer SOD in BSA was also found to be independent of temperature over this range, but the gradient of tracer SOD in ovomucoid depended significantly upon temperature in a manner indicating a significant enthalpic (attractive) component of the overall interaction between SOD and ovomucoid. The experimental data are analyzed using model-free expansions of the thermodynamic activity coefficients of tracer and crowder in powers of the concentration of crowder and using approximate statistical thermodynamic models based upon highly simplified descriptions of molecular structure and interactions. Detailed analysis of the results indicates a relatively small contribution of nonspecific attraction to the total protein-protein interaction, which is dominated by steric repulsion.
在浓度为 2mg/mL 的三种稀有的“示踪”蛋白(牛血清白蛋白、超氧化物歧化酶和卵类黏蛋白)和两种浓度高达 100mg/mL 的“拥挤”蛋白(卵类黏蛋白和 BSA)之间的相互作用,通过分析示踪剂和拥挤剂的平衡梯度随拥挤剂浓度的依赖性来进行描述。发现两种拥挤蛋白的平衡梯度在 5-37°C 的温度范围内独立于温度。在这个范围内,互补拥挤物种中示踪剂 BSA 和卵类黏蛋白的平衡梯度也独立于温度,表明这些示踪剂和拥挤剂之间的相互作用主要是排斥的,本质上完全是熵驱动的。在这个范围内,BSA 中示踪 SOD 的平衡梯度也独立于温度,但 SOD 在卵类黏蛋白中的梯度显著依赖于温度,表明 SOD 和卵类黏蛋白之间的整体相互作用存在显著的焓(吸引)成分。实验数据使用示踪剂和拥挤剂热力学活度系数的无模型展开式进行分析,这些展开式是关于拥挤剂浓度的幂次展开式,并且使用基于对分子结构和相互作用的高度简化描述的近似统计热力学模型。对结果的详细分析表明,非特异性吸引力对总蛋白质-蛋白质相互作用的贡献相对较小,主要由空间排斥驱动。