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为固碳、固氮和脱卤的细菌创建遗传工具包。

Creating a Genetic Toolbox for the Carbon-Fixing, Nitrogen-Fixing and Dehalogenating Bacterium .

机构信息

Department of Chemical Engineering, Northeastern University, Boston, Massachusetts 02115, United States.

Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, United States.

出版信息

ACS Synth Biol. 2024 Nov 15;13(11):3658-3667. doi: 10.1021/acssynbio.4c00455. Epub 2024 Oct 30.

Abstract

is a metabolically flexible microorganism with two key features: (1) The organism has adapted to grow on a wide variety of carbon sources including CO, methanol, formate, propylene, haloalkanes and haloacids; and (2) was the first chemoautotroph identified that could also simultaneously fix N, meaning the organism can utilize CO, N, and H for growth. This metabolic flexibility has enabled use of for gas fixation, the creation of fertilizers and foods from gases, and the dehalogenation of environmental contaminants. Despite the wide variety of applications that have already been demonstrated for this organism, there are few genetic tools available to explore and exploit its metabolism. Here, we report a genetic toolbox for use in . We first identified suitable origins of replication and quantified their copy number, and identified antibiotic resistance cassettes that could be used as selectable markers. We then tested several constitutive and inducible promoters and terminators and quantified their promoter strengths and termination efficiencies. Finally, we demonstrated that gene expression tools remain effective under both autotrophic and dehalogenative metabolic conditions to show that these tools can be used in the environments that make unique. Our extensive characterization of these tools in will enable genetic and metabolic engineering to optimize production of fertilizers and foods from gases, and enable bioremediation of halogenated environmental contaminants.

摘要

是一种代谢灵活的微生物,具有两个关键特征:(1)该生物已适应于利用包括 CO、甲醇、甲酸盐、丙烯、卤代烷烃和卤代酸在内的各种碳源进行生长;(2) 是第一个被鉴定为能够同时固定氮的化能自养生物,这意味着该生物可以利用 CO、N 和 H 进行生长。这种代谢灵活性使 能够用于气体固定,从气体中制造肥料和食品,以及脱除环境污染物中的卤原子。尽管已经证明了这种生物有广泛的应用,但可用的遗传工具却很少,无法探索和利用其代谢途径。在这里,我们报告了一种用于 的遗传工具包。我们首先鉴定了合适的复制起点,并对其拷贝数进行了定量分析,确定了可作为选择标记的抗生素抗性盒。然后,我们测试了几种组成型和诱导型启动子和终止子,并对它们的启动子强度和终止效率进行了定量分析。最后,我们证明了在自养和脱卤代谢条件下基因表达工具仍然有效,表明这些工具可以在使 独特的环境中使用。我们对这些工具在 中的广泛表征将使遗传和代谢工程能够优化从气体中生产肥料和食品,并使卤代环境污染物的生物修复成为可能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f68/11574943/f4af72e8b294/sb4c00455_0001.jpg

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