Gainey D Patrick, Shubin Andrey V, Hunter Craig P
Department of Molecular and Cellular Biology, Harvard University, 16 Divinity Avenue, The Biological Laboratory, Cambridge, MA 02138.
bioRxiv. 2024 Oct 31:2024.06.01.596941. doi: 10.1101/2024.06.01.596941.
Here we report our attempt to replicate reports of transgenerational epigenetic inheritance in . Published results from multiple laboratories show that adults and their F1 embryos exposed to the pathogen show pathogen aversion behavior and a pathogen exposure-dependent increase in reporter gene expression. However, results from one group show persistence of the aversion behavior and elevated expression in the F2, F3, and F4 generations. In contrast, we failed to consistently detect either the pathogen avoidance response or elevated expression beyond the F1 generation. We did confirm that the dsRNA transport proteins SID-1 and SID-2 are required for the intergenerational (F1) inheritance of pathogen avoidance, but not for the F1 inheritance of elevated expression. Furthermore, our reanalysis of RNA seq data provides additional evidence that this intergenerational inherited PA14 response may be mediated by small RNAs. The experimental methods are well-described, the source materials are readily available, including samples from the reporting laboratory, and we explored a variety of environmental conditions likely to account for lab-to-lab variability. None of these adjustments altered our results. We conclude that this example of transgenerational inheritance lacks robustness, confirm that the intergenerational avoidance response, but not the elevated expression in F1 progeny, requires and , and identify candidate siRNAs and target genes that may mediate this intergenerational response.
在此,我们报告了我们尝试在……中复制跨代表观遗传遗传报告的情况。多个实验室发表的结果表明,暴露于病原体的成虫及其F1代胚胎表现出病原体厌恶行为以及报告基因表达随病原体暴露而增加。然而,一组的结果显示,F2、F3和F4代中厌恶行为持续存在且表达升高。相比之下,我们未能在F1代之后持续检测到病原体回避反应或表达升高。我们确实证实,dsRNA转运蛋白SID-1和SID-2是病原体回避代际(F1)遗传所必需的,但不是F1代表达升高所必需的。此外,我们对RNA序列数据的重新分析提供了额外证据,表明这种代际遗传的PA14反应可能由小RNA介导。实验方法描述详尽,原材料易于获取,包括来自报告实验室的样本,并且我们探索了各种可能解释实验室间差异的环境条件。这些调整均未改变我们的结果。我们得出结论,这种跨代遗传的例子缺乏稳健性,证实代际回避反应而非F1代子代中表达升高需要……和……,并确定了可能介导这种代际反应的候选siRNA和靶基因。