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连锁不平衡分析中的考虑因素。

Considerations in the search for epistasis.

机构信息

Tilburg University, Tilburg, The Netherlands.

SITraN, University of Sheffield, Sheffield, UK.

出版信息

Genome Biol. 2024 Nov 19;25(1):296. doi: 10.1186/s13059-024-03427-z.

Abstract

Epistasis refers to changes in the effect on phenotype of a unit of genetic information, such as a single nucleotide polymorphism or a gene, dependent on the context of other genetic units. Such interactions are both biologically plausible and good candidates to explain observations which are not fully explained by an additive heritability model. However, the search for epistasis has so far largely failed to recover this missing heritability. We identify key challenges and propose that future works need to leverage idealized systems, known biology and even previously identified epistatic interactions, in order to guide the search for new interactions.

摘要

上位性是指单位遗传信息(如单核苷酸多态性或基因)对表型的影响发生变化,取决于其他遗传单位的背景。这种相互作用不仅在生物学上是合理的,而且是解释加性遗传模型无法完全解释的观察结果的良好候选者。然而,到目前为止,对上位性的研究在很大程度上未能恢复这种缺失的遗传力。我们确定了关键的挑战,并提出未来的工作需要利用理想化的系统、已知的生物学,甚至以前确定的上位性相互作用,以指导新相互作用的搜索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63c5/11574992/a8b8406a2bfd/13059_2024_3427_Fig1_HTML.jpg

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