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新种和新种,从枯萎的辣椒植株中分离得到。

sp. nov. and sp. nov., isolated from wilted pepper plants.

机构信息

Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, PR China.

出版信息

Int J Syst Evol Microbiol. 2024 Nov;74(11). doi: 10.1099/ijsem.0.006550.

Abstract

Two Gram-stain-negative, aerobic, rod-shaped, non-endospore-forming bacteria, designated as strain MH1 and MH2, were isolated from branches of wilted pepper plants () collected from a farmland in Machong town, Guangdong, China, and investigated using a polyphasic approach. MH1 grew at temperatures of 4-42 °C (optimum 28 °C), with 0-6.0 % (w/v) NaCl and at pH 4.0-10.0 (optimum pH 4.0). MH2 grew at temperatures of 4-42 °C (optimum 28 °C), with 0-6.0% (w/v) NaCl and at pH 4.0-10.0 (optimum pH 5.0). Analysis of the 16S rRNA gene sequence indicated that MH1 belongs to and MH2 belongs to . Genome-based phylogenetic analysis further established that MH1 shares the closest evolutionary relationships with DSM 18929 and DSM 18941, and MH2 is sister to RW3S1. Whole-genome comparisons between MH1 and known species revealed average nucleotide identity (ANI) values up to 84.5%, as well as digital DNA-DNA hybridization (dDDH) values up to 28.3%, both substantially lower than the accepted thresholds for species delineation (ANI: 95%; dDDH: 70%). The ANI and dDDH values between MH2 and known species were at most 94.6 and 59.2 %, respectively. Additional biochemical and physiological analyses further support that MH1 and MH2 represent a novel species in and , respectively. Notably, the differences in carbon source utilization could differentiate MH1 and its close relatives in . The major fatty acids were iso-C, iso-C and iso-C for MH1 and were C, C ω7c/C ω6c (summed feature 8), C ω7c/C ω6c (summed feature 3) and C cyclo for MH2. Therefore, we propose a new species sp. nov., with MH1 (=GDMCC 1.3749=JCM 36317) as the type strain, and a new species sp. nov., with MH2 (=GDMCC 1.3750=JCM 36318) as the type strain. The MH1 genome has a size of 4.18 Mb and a GC-content of 67.19 mol%, while the MH2 genome has a size of 5.71 Mb and a GC-content of 63.12 mol%.

摘要

两株革兰氏阴性、需氧、杆状、非芽孢形成细菌,分别命名为 MH1 和 MH2 株,从中国广东省马冲镇农田枯萎辣椒植株的分枝中分离得到,并采用多相研究方法进行了研究。MH1 在 4-42°C(最佳 28°C)、0-6.0%(w/v)NaCl 和 pH 4.0-10.0(最佳 pH 4.0)的条件下生长。MH2 在 4-42°C(最佳 28°C)、0-6.0%(w/v)NaCl 和 pH 4.0-10.0(最佳 pH 5.0)的条件下生长。16S rRNA 基因序列分析表明,MH1 属于 ,MH2 属于 。基于基因组的系统发育分析进一步表明,MH1 与 DSM 18929 和 DSM 18941 最接近,而 MH2 与 RW3S1 姐妹关系最近。MH1 与已知 种之间的全基因组比较显示平均核苷酸同一性(ANI)值高达 84.5%,数字 DNA-DNA 杂交(dDDH)值高达 28.3%,均远低于种界定的可接受阈值(ANI:95%;dDDH:70%)。MH2 与已知 种之间的 ANI 和 dDDH 值最高分别为 94.6%和 59.2%。额外的生化和生理分析进一步支持 MH1 和 MH2 分别代表 中的一个新种和 中的一个新种。值得注意的是,碳源利用的差异可以区分 MH1 及其近亲在 中的关系。主要脂肪酸为 MH1 的 iso-C、iso-C 和 iso-C,而 MH2 的则为 C、C ω7c/C ω6c(特征 8 总和)、C ω7c/C ω6c(特征 3)和 C 环。因此,我们提出了一个新的物种 sp. nov.,以 MH1(=GDMCC 1.3749=JCM 36317)作为模式株,和一个新的物种 sp. nov.,以 MH2(=GDMCC 1.3750=JCM 36318)作为模式株。MH1 基因组大小为 4.18 Mb,GC 含量为 67.19 mol%,而 MH2 基因组大小为 5.71 Mb,GC 含量为 63.12 mol%。

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