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利用代谢模型优化 KT2440 中维生素 B12 产量的策略

Strategy for Optimizing Vitamin B12 Production in KT2440 Using Metabolic Modeling.

作者信息

Prieto-de Lima Thomaz Satuye, Rojas-Jimenez Keilor, Vaglio Christopher

机构信息

Postgraduate Program in Biology, University of Costa Rica, San José 11501, Costa Rica.

School of Biology, University of Costa Rica, San José 11501, Costa Rica.

出版信息

Metabolites. 2024 Nov 18;14(11):636. doi: 10.3390/metabo14110636.

DOI:10.3390/metabo14110636
PMID:39590872
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11596459/
Abstract

: Vitamin B is very important for human health, as it is a cofactor for enzymatic activities and plays various roles in human physiology. It is highly valued in the pharmaceutical, food, and additive production industries. Some of the bacteria currently used for the vitamin production are difficult to modify with gene-editing tools and may have slow growth. We propose the use of the bacteria KT2440 for the production of vitamin B because it has a robust chassis for genetic modifications. The present wok evaluates KT2440 as a host for vitamin B production and explore potential gene-editing optimization strategies. : We curated and modified a genome-scale metabolic model of KT2440 and evaluated different strategies to optimize vitamin B production using the knockin and OptGene algorithms from the COBRA Toolbox. Furthermore, we examined the presence of riboswitches as cis-regulatory elements and calculated theoretical biomass growth yields and vitamin B production using a flux balance analysis (FBA). : According to the flux balance analysis of KT2440 under culture conditions, the biomass production values could reach 1.802 gDW·h·L, and vitamin B production could reach 0.359 µmol·gDW·h·L. The theoretical vitamin B synthesis rate calculated using KT2040 with two additional reactions was 14 times higher than that calculated using the control, , which has been used for the industrial production of this vitamin. : We propose that, with the addition of aminopropanol linker genes and the modification of riboswitches, KT2440 may become a suitable host for the industrial production of vitamin B.

摘要

维生素B对人体健康非常重要,因为它是酶活性的辅助因子,在人体生理过程中发挥着多种作用。它在制药、食品和添加剂生产行业中具有很高的价值。目前用于生产维生素的一些细菌难以用基因编辑工具进行改造,而且生长可能较慢。我们建议使用细菌KT2440来生产维生素B,因为它具有用于基因改造的强大底盘。本研究评估了KT2440作为维生素B生产宿主的潜力,并探索了潜在的基因编辑优化策略。:我们精心策划并修改了KT2440的基因组规模代谢模型,并使用来自COBRA Toolbox的敲入和OptGene算法评估了不同的策略来优化维生素B的生产。此外,我们检查了作为顺式调控元件的核糖开关的存在情况,并使用通量平衡分析(FBA)计算了理论生物量生长产量和维生素B的产量。:根据在培养条件下对KT2440的通量平衡分析,生物量产量值可达1.802 gDW·h·L,维生素B产量可达0.359 µmol·gDW·h·L。使用添加了两个额外反应的KT2040计算的理论维生素B合成速率比使用对照计算的速率高14倍,对照已用于该维生素的工业生产。:我们建议,通过添加氨基丙醇连接基因和改造核糖开关,KT2440可能成为维生素B工业生产的合适宿主。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151b/11596459/10e54a4c94f3/metabolites-14-00636-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151b/11596459/05264279ddc3/metabolites-14-00636-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151b/11596459/1f3c68b01399/metabolites-14-00636-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151b/11596459/5d8af90badc8/metabolites-14-00636-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151b/11596459/10e54a4c94f3/metabolites-14-00636-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151b/11596459/05264279ddc3/metabolites-14-00636-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151b/11596459/1f3c68b01399/metabolites-14-00636-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151b/11596459/5d8af90badc8/metabolites-14-00636-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151b/11596459/10e54a4c94f3/metabolites-14-00636-g004.jpg

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