Department of Biology, Institute of Graduate Studies in Sciences, Istanbul University, 34134, Vezneciler, Istanbul, Türkiye.
Department of Pathology Laboratory Techniques, Vocational School of Health Services, Uskudar University, 34664, Uskudar, Istanbul, Türkiye.
Antonie Van Leeuwenhoek. 2024 Nov 27;118(1):34. doi: 10.1007/s10482-024-02037-w.
A novel gram-stain-indeterminate, rod-shaped, endospore-forming, motile, aerobic bacterium, designated JETA1-E2, was isolated from aircraft fuel Jet A1 sample. The strain showed high pairwise similarity values of partial 16S rRNA gene sequences to Sphingomonas paucimobilis (MT367853) (99.42%), Sphingomonas sanguinis (MF319771) (99.34%), and Sphingomonas pseudosanguinis (HE716953) (99.27%) within the family Sphingomonadaceae. However, API test results revealed that the strain JETA1-E2 differed from these type strains. The phylogenetic tree based on the whole genome and the phylogenomic tree generated with the UBCG tool showed that the strain JETA1-E2 formed a distinct monophyletic clade within the family Sphingomonadaceae, and clustered distantly with the genera Sphingomonas and Sphingobium. The predominant respiratory quinone is Q-10. The major fatty acids are C and summed feature 8 (Cω7c and/or Cω6c). C is present in small amounts. The polar lipids are diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, aminophospholipid, unidentified glycolipid, and two unidentified sphingoglycolipids. The only polyamine is putrescine in minor amounts. The DNA G + C content of the type strain is 66.5 mol%. Several unique genes in the strain JETA1-E2 may contribute to fight against various stressors, virulence and pathogenicity, as well as survival in challenging conditions. The strain JETA1-E2 contains 100 of the characterised proteins available in the HADEG database of which 58% of these are involved in metabolic process of aromatics degradation. The findings indicate that the strain JETA1-E2 has the potential to metabolise hydrocarbons such as fuel, especially aromatic compounds. Based on the results of polyphasic taxonomic analyses, the strain JETA1-E2 represents a novel species in a new genus in the family Sphingomonadaceae for which the name Facivitalis istanbulensis gen. nov., sp. nov. is proposed. The type strain of Facivitalis istanbulensis is JETA1-E2 (DSM 117971 = LMG 33634 = KUEN 1206 (B) F3-1-1).
一种新型革兰氏染色不定、杆状、内生孢子形成、能动、需氧细菌,命名为 JETA1-E2,从飞机燃料 Jet A1 样品中分离得到。该菌株与鞘氨醇单胞菌属(MT367853)(99.42%)、血琼脂单胞菌(MF319771)(99.34%)和假血琼脂单胞菌(HE716953)(99.27%)的部分 16S rRNA 基因序列具有高的相似性值。然而,API 测试结果表明,该菌株与这些模式菌株不同。基于全基因组的系统发育树和 UBCG 工具生成的系统发育树表明,菌株 JETA1-E2 在鞘氨醇单胞菌科内形成一个独特的单系分支,与鞘氨醇单胞菌属和鞘氨醇杆菌属聚类较远。主要呼吸醌为 Q-10。主要脂肪酸为 C 和总和特征 8(Cω7c 和/或 Cω6c)。C 含量较少。极性脂为双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰甘油、磷脂酰胆碱、氨基磷脂、未鉴定的糖脂和两种未鉴定的神经酰胺糖脂。唯一的多胺是腐胺,含量较少。模式菌株的 DNA G+C 含量为 66.5 mol%。菌株 JETA1-E2 中的一些独特基因可能有助于对抗各种应激源、毒力和致病性,并在挑战性条件下存活。该菌株 JETA1-E2 包含 100 种在 HADEG 数据库中表征的蛋白质,其中 58%的蛋白质参与芳香族降解的代谢过程。这些发现表明,该菌株 JETA1-E2 具有代谢烃类(如燃料)的潜力,尤其是芳香族化合物。基于多相分类学分析的结果,该菌株 JETA1-E2 代表了鞘氨醇单胞菌科中的一个新属中的一个新种,提议命名为 Facivitalis istanbulensis gen. nov.,sp. nov.。Facivitalis istanbulensis 的模式菌株是 JETA1-E2(DSM 117971= LMG 33634=KUEN 1206(B)F3-1-1)。