全基因组鉴定和谷胱甘肽转移酶基因家族的表达分析及其对黑麦(Secale cereale)非生物胁迫的响应。
Genome-wide identification and expression analysis of the glutathione transferase gene family and its response to abiotic stress in rye (Secale cereale).
机构信息
Shaanxi Key Laboratory of Qinling Ecological Security, Bio-Agriculture Institute of Shaanxi, Xi'an, Shaanxi, 710043, China.
Shangluo Institute of Agricultural Science, Shangluo, Shaanxi, 726000, China.
出版信息
BMC Genomics. 2024 Nov 27;25(1):1142. doi: 10.1186/s12864-024-11080-w.
BACKGROUND
Glutathione S-transferases (GSTs) are a crucial class of plant enzymes, playing pivotal roles in plant growth, development, and stress responses. However, studies on the functions and regulatory mechanisms of GSTs in plants remain relatively limited.
RESULTS
This study aimed to comprehensively identify and analyze GST proteins in rye. A total of 171 rye GST genes were identified and classified into four subfamilies, Tau, Phi, Theta, and Zeta, based on their sequence similarity and structural features. Notably, genes classified under the Tau subfamily were the most abundant at 118, while only one gene was under the Theta subfamily. Subsequent phylogenetic and collinearity analysis revealed 29 tandem duplications and 6 segmental duplication events. There were 13 collinear genes between rye and wheat, maize, and rice, demonstrating the expansion and evolution of the GST gene family. An analysis of the expression profiles of 20 representative ScGST genes in different tissues and under various environmental stresses was performed to further understand the functions and expression patterns of ScGST genes. The results showed that these genes exhibited the highest expression levels in stems, followed by fruits and leaves.
CONCLUSIONS
This study provides a comprehensive identity, classification, and analysis of rye GST genes, which offer valuable insights into the functionality and regulatory mechanisms of the GST gene family in rye. Especially, ScGST39 was identified as a candidate gene because it was significantly upregulated under multiple stress conditions, indicating its potential crucial role in plant stress tolerance mechanisms.
背景
谷胱甘肽 S-转移酶(GSTs)是一类重要的植物酶,在植物生长、发育和应激反应中起着关键作用。然而,关于 GSTs 在植物中的功能和调控机制的研究仍然相对有限。
结果
本研究旨在全面鉴定和分析黑麦中的 GST 蛋白。共鉴定出 171 个黑麦 GST 基因,并根据其序列相似性和结构特征将其分为四个亚家族,即 Tau、Phi、Theta 和 Zeta。值得注意的是,Tau 亚家族的基因最为丰富,有 118 个,而 Theta 亚家族仅有 1 个基因。随后的系统发育和共线性分析揭示了 29 个串联重复和 6 个片段重复事件。黑麦与小麦、玉米和水稻之间有 13 个共线性基因,表明 GST 基因家族的扩张和进化。对 20 个代表性 ScGST 基因在不同组织和不同环境胁迫下的表达谱进行了分析,以进一步了解 ScGST 基因的功能和表达模式。结果表明,这些基因在茎中表达水平最高,其次是果实和叶片。
结论
本研究提供了黑麦 GST 基因的全面鉴定、分类和分析,为深入了解 GST 基因家族在黑麦中的功能和调控机制提供了有价值的信息。特别是 ScGST39 被鉴定为候选基因,因为它在多种胁迫条件下显著上调,表明其在植物应激耐受机制中可能具有重要作用。