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人类α卫星重复DNA家族内的序列异质性。

Sequence heterogeneity within the human alphoid repetitive DNA family.

作者信息

Devilee P, Slagboom P, Cornelisse C J, Pearson P L

出版信息

Nucleic Acids Res. 1986 Mar 11;14(5):2059-73. doi: 10.1093/nar/14.5.2059.

DOI:10.1093/nar/14.5.2059
PMID:3960717
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC339643/
Abstract

We have cloned and determined the base-sequence and genome organization of two human chromosome-specific alphoid DNA fragments, designated L1.26, mapping principally to chromosomes 13 and 21, and L1.84, mapping to chromosome 18. Their copy number is estimated to be approximately 2,000 per haploid genome. L1.84 has a double-dimer organization, whereas L1.26 has a much less defined higher order tandem organization. Further, we present evidence that the restriction-site spacing within the alphoid DNA family is chromosome specific. From sequence analysis, clones L1.26 and L1.84 are found to consist of 5 and 4 tandemly duplicated 170 bp monomers. Cross-homology between the various monomers is 65-85%. The analysis suggests that the evolution of tandem-arrays does not take place via a defined 340 bp unit, as was inferred by others, but via circularly permutated monomers or multimers of the 170 bp unit.

摘要

我们已经克隆并确定了两个人类染色体特异性α卫星DNA片段的碱基序列和基因组组织,分别命名为L1.26,主要定位于13号和21号染色体,以及L1.84,定位于18号染色体。它们的拷贝数估计为每个单倍体基因组约2000个。L1.84具有双二聚体结构,而L1.26具有定义不太明确的高阶串联结构。此外,我们提供证据表明α卫星DNA家族内的限制性酶切位点间距是染色体特异性的。通过序列分析,发现克隆L1.26和L1.84分别由5个和4个串联重复的170 bp单体组成。各种单体之间的交叉同源性为65-85%。分析表明,串联阵列的进化不是通过其他人推断的定义明确的340 bp单元进行的,而是通过170 bp单元的环状排列单体或多聚体进行的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7d5/339643/856947421cd7/nar00274-0138-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7d5/339643/a070e5c4e586/nar00274-0136-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7d5/339643/446c21163a1b/nar00274-0136-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7d5/339643/181cec26e1ee/nar00274-0137-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7d5/339643/856947421cd7/nar00274-0138-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7d5/339643/a070e5c4e586/nar00274-0136-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7d5/339643/446c21163a1b/nar00274-0136-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7d5/339643/181cec26e1ee/nar00274-0137-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7d5/339643/856947421cd7/nar00274-0138-a.jpg

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1
Sequence heterogeneity within the human alphoid repetitive DNA family.人类α卫星重复DNA家族内的序列异质性。
Nucleic Acids Res. 1986 Mar 11;14(5):2059-73. doi: 10.1093/nar/14.5.2059.
2
Characterization of human centromeric regions of specific chromosomes by means of alphoid DNA sequences.通过α卫星DNA序列对特定染色体的人类着丝粒区域进行表征。
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3
A cloned sequence, p82H, of the alphoid repeated DNA family found at the centromeres of all human chromosomes.在所有人类染色体着丝粒处发现的α卫星重复DNA家族的一个克隆序列p82H。
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Two subsets of human alphoid repetitive DNA show distinct preferential localization in the pericentric regions of chromosomes 13, 18, and 21.人类α卫星重复DNA的两个亚群在13号、18号和21号染色体的着丝粒周围区域表现出明显的优先定位。
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Concerted evolution of primate alpha satellite DNA. Evidence for an ancestral sequence shared by gorilla and human X chromosome alpha satellite.灵长类α卫星DNA的协同进化。大猩猩和人类X染色体α卫星共享祖先序列的证据。
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[Structural analysis of alphoid DNA of primates. I. Heterogeneity of nucleotide sequence of alphoid repeats in human DNA].[灵长类动物α卫星DNA的结构分析。I. 人类DNA中α卫星重复序列核苷酸序列的异质性]
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[Cloned fragment of human alphoid DNA--a molecular marker of the pericentromeric region of chromosome 18].[人α卫星DNA的克隆片段——18号染色体着丝粒周围区域的分子标记]
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Structure of repeated sequences in the centromeric region of the human Y chromosome.
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Characterization of a cloned DNA sequence that is present at centromeres of all human autosomes and the X chromosome and shows polymorphic variation.对一个克隆的DNA序列的特征描述,该序列存在于所有人类常染色体和X染色体的着丝粒处,并表现出多态性变异。
Proc Natl Acad Sci U S A. 1984 Aug;81(15):4884-8. doi: 10.1073/pnas.81.15.4884.

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