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细枝节杆菌新种,分离自西南印度洋中脊。

Cerasicoccus fimbriatus sp. nov., isolated from the mid-ridge of the Southwest Indian Ocean.

机构信息

State Key Laboratory of Marine Environmental Science, College of Ocean and Earth Science, Fujian Key Laboratory of Marine Carbon Sequestration, Xiamen University, Xiamen, 361000, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2024 Nov 29;118(1):37. doi: 10.1007/s10482-024-02047-8.

Abstract

A Gram-stain-negative bacterium, designated as strain TK19100, was isolated from the mid-ridge of the Southwest Indian Ocean. Cells of strain TK19100 were strictly aerobic, non-motile and short-rod shaped with fimbriae-like structures around the cell surface. Growth occurred at 15-40 °C, at pH 6.0-9.0 and with 1-10% (w/v) NaCl. Strain TK19100 shared the highest 16S rRNA gene sequence similarity with Cerasicoccus frondis NBRC 105381 of 97.74%, followed by Cerasicoccus arenae KCTC 12870 of 97.69% and Cerasicoccus maritimus NBRC 105382 of 97.40%. The phylogenetic tree based on both 16S rRNA genes and 92 core genes placed strain TK19100 in a new linage within the genus Cerasicoccus. The genome size of strain TK19100 was 5.07 Mb with the DNA G + C content 56.1%. The average nucleotide identity value and the digital DNA-DNA hybridization value of strain TK19100 compared with the closest related species, Cerasicoccus frondis, were 78.39% and 23.70%, respectively. Strain TK19100 encoded a previously unreported combination of GH16 and Carbohydrate Binding Module 96. The major fatty acids of strain TK19100 were C and C ω9c. Menaquinone-7 was the sole respiratory quinone. The phenotypic and genotypic characterization analysis indicate that strain TK19100 represents a novel species affiliated to the genus Cerasicoccus, for which the name Cerasicoccus fimbriatus sp. nov. is proposed. The type strain is TK19100 (= CGMCC 1.18957 = NBRC 116189).

摘要

一株革兰氏阴性细菌,被命名为 TK19100 菌株,从西南印度洋的中脊分离得到。TK19100 菌株的细胞为严格需氧、非运动和短杆状,细胞表面有类似菌毛的结构。该菌株在 15-40°C、pH6.0-9.0 和 1-10%(w/v)NaCl 的条件下生长。TK19100 菌株与 Cerasicoccus frondis NBRC 105381 的 16S rRNA 基因序列相似度最高,为 97.74%,其次是 Cerasicoccus arenae KCTC 12870,为 97.69%,Cerasicoccus maritimus NBRC 105382 为 97.40%。基于 16S rRNA 基因和 92 个核心基因的系统发育树将 TK19100 菌株置于 Cerasicoccus 属内的一个新谱系中。TK19100 菌株的基因组大小为 5.07 Mb,DNA G+C 含量为 56.1%。与最接近的相关物种 Cerasicoccus frondis 相比,TK19100 菌株的平均核苷酸同一性值和数字 DNA-DNA 杂交值分别为 78.39%和 23.70%。TK19100 菌株编码了一个以前未报道的 GH16 和碳水化合物结合模块 96 的组合。菌株 TK19100 的主要脂肪酸为 C 和 C ω9c。menaquinone-7 是唯一的呼吸醌。表型和基因型特征分析表明,TK19100 菌株代表了一个新的种,属于 Cerasicoccus 属,因此提议命名为 Cerasicoccus fimbriatus sp. nov.。该模式菌株为 TK19100(=CGMCC 1.18957=NBRC 116189)。

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