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基于集成学习方法提高拉曼测量的信噪比。

Improving signal-to-noise ratio of Raman measurements based on ensemble learning approach.

作者信息

Jia Yufei, Gao Yuning, Xu Wenbin, Wang Yunxin, Yan Zejun, Chen Keren, Chen Shuo

机构信息

College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, 110169, China.

National Key Laboratory of Scattering and Radiation, Beijing, 110854, China.

出版信息

Anal Bioanal Chem. 2025 Jan;417(3):641-652. doi: 10.1007/s00216-024-05676-0. Epub 2024 Nov 30.

DOI:10.1007/s00216-024-05676-0
PMID:39613989
Abstract

Raman spectroscopy is an extensively explored vibrational spectroscopic technique to analyze the biochemical composition and molecular structure of samples, which is often assumed to be non-destructive when carefully using proper laser power and exposure time. However, the inherently weak Raman signal and concurrent fluorescence interference often lead to Raman measurements with a low signal-to-noise ratio (SNR), especially for biological samples. Great efforts have been made to develop experimental approaches and/or numerical algorithms to improve the SNR. In this study, we proposed an ensemble learning approach to recover and denoise Raman measurements with a low SNR. The proposed ensemble learning approach was evaluated on 986 pairs of Raman measurements, each pair of which consists of a low SNR Raman spectrum and a high SNR reference Raman spectrum from the exact same fungal sample but uses 200 times the integration time. Compared with conventional methods, the Raman measurements recovered by the proposed ensemble learning approach are more identical to high SNR reference Raman measurements, with an average RMSE and MAE of only 1.337 × 10 and 1.066 × 10, respectively; thus, the proposed ensemble learning approach is expected to be a powerful tool for numerically improving the SNR of Raman measurements and further benefits rapid Raman acquisition from biological samples.

摘要

拉曼光谱是一种被广泛探索的振动光谱技术,用于分析样品的生化组成和分子结构。在小心使用适当的激光功率和曝光时间时,通常认为它是无损的。然而,拉曼信号固有的微弱以及同时存在的荧光干扰常常导致拉曼测量的信噪比(SNR)较低,尤其是对于生物样品。人们已经做出了巨大努力来开发实验方法和/或数值算法以提高信噪比。在本研究中,我们提出了一种集成学习方法来恢复和去噪低信噪比的拉曼测量结果。所提出的集成学习方法在986对拉曼测量数据上进行了评估,每一对数据都由一个低信噪比拉曼光谱和一个来自完全相同真菌样品但积分时间为其200倍的高信噪比参考拉曼光谱组成。与传统方法相比,通过所提出的集成学习方法恢复的拉曼测量结果与高信噪比参考拉曼测量结果更为相似,平均均方根误差(RMSE)和平均绝对误差(MAE)分别仅为1.337×10和1.066×10;因此,所提出的集成学习方法有望成为一种强大的工具,用于在数值上提高拉曼测量的信噪比,并进一步有利于从生物样品中快速获取拉曼光谱。

相似文献

1
Improving signal-to-noise ratio of Raman measurements based on ensemble learning approach.基于集成学习方法提高拉曼测量的信噪比。
Anal Bioanal Chem. 2025 Jan;417(3):641-652. doi: 10.1007/s00216-024-05676-0. Epub 2024 Nov 30.
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本文引用的文献

1
Variational Mode Decomposition for Raman Spectral Denoising.用于拉曼光谱去噪的变分模态分解
Molecules. 2023 Sep 2;28(17):6406. doi: 10.3390/molecules28176406.
2
Prediction of the postoperative prognosis in patients with non-muscle-invasive bladder cancer based on preoperative serum surface-enhanced Raman spectroscopy.基于术前血清表面增强拉曼光谱预测非肌层浸润性膀胱癌患者的术后预后
Biomed Opt Express. 2022 Jul 11;13(8):4204-4221. doi: 10.1364/BOE.465295. eCollection 2022 Aug 1.
3
Weighted spectral reconstruction method for discrimination of bacterial species with low signal-to-noise ratio Raman measurements.
用于通过低信噪比拉曼测量鉴别细菌种类的加权光谱重建方法。
RSC Adv. 2019 Mar 25;9(17):9500-9508. doi: 10.1039/c9ra00327d. eCollection 2019 Mar 22.
4
High-Throughput Molecular Imaging via Deep-Learning-Enabled Raman Spectroscopy.高通量分子成像通过深度学习赋能的拉曼光谱。
Anal Chem. 2021 Dec 7;93(48):15850-15860. doi: 10.1021/acs.analchem.1c02178. Epub 2021 Nov 19.
5
A Portable Ultrawideband Confocal Raman Spectroscopy System with a Handheld Probe for Skin Studies.一种便携式超宽带共焦拉曼光谱系统,带有用于皮肤研究的手持式探头。
ACS Sens. 2021 Aug 27;6(8):2960-2966. doi: 10.1021/acssensors.1c00761. Epub 2021 Aug 11.
6
SynSigGAN: Generative Adversarial Networks for Synthetic Biomedical Signal Generation.SynSigGAN:用于合成生物医学信号生成的生成对抗网络。
Biology (Basel). 2020 Dec 3;9(12):441. doi: 10.3390/biology9120441.
7
Denoising Raman spectra by Wiener estimation with a numerical calibration dataset.使用数值校准数据集通过维纳估计去噪拉曼光谱。
Biomed Opt Express. 2019 Dec 10;11(1):200-214. doi: 10.1364/BOE.11.000200. eCollection 2020 Jan 1.
8
Using Raman spectroscopy to characterize biological materials.利用拉曼光谱技术对生物材料进行特征分析。
Nat Protoc. 2016 Apr;11(4):664-87. doi: 10.1038/nprot.2016.036. Epub 2016 Mar 10.
9
Recovery of Raman spectra with low signal-to-noise ratio using Wiener estimation.使用维纳估计恢复低信噪比的拉曼光谱。
Opt Express. 2014 May 19;22(10):12102-14. doi: 10.1364/OE.22.012102.
10
Surface-enhanced Raman spectroscopy (SERS): progress and trends.表面增强拉曼光谱(SERS):进展与趋势。
Anal Bioanal Chem. 2012 Apr;403(1):27-54. doi: 10.1007/s00216-011-5631-x. Epub 2011 Dec 29.