Love Nicola, Painset Anaïs, Aird Heather, Coleman Hayley, Sorrell Shirley, Stoker Claire, Manley Petra, Wilson Deborah
Field Service, UK Health Security Agency, Northeast and Yorkshire & Humber, Newcastle, UK.
National Institute for Health Research Health Protection Research Unit (NIHR HPRU) in Gastrointestinal Infections, University of Liverpool, Liverpool, UK.
Epidemiol Infect. 2024 Dec 5;152:e154. doi: 10.1017/S0950268824001547.
Between February and April 2018, within a unique 5-single nucleotide polymorphism (SNP) address was isolated from 28 cases with links to a small rural area of Northeast England, with five cases prospectively identified by whole genome sequencing (WGS). Infections had a severe clinical picture with ten cases hospitalized (36%), two cases with invasive disease, and two deaths reported. Interviews determined that 24 cases (86%) had been exposed to a local independent butcher's shop (Butcher A).A case-control study using controls recruited by systematic digit dialling established that cases were 68 times more likely to have consumed cooked meat from Butcher A (Adjusted OR 68.1; 95% CI: 1.9-2387.6; = 0.02). genetically highly related to 28 of the outbreak cases was also isolated from a sample of cooked meat on sale in the premises.Epidemiological and microbiological investigations suggest this outbreak was likely associated with the consumption of ready-to-eat foods supplied by the implicated butcher. A relatively large number of cases were involved despite the rurality of the food business, with cases resident across the Northeast and Yorkshire identified using WGS, demonstrating the benefit of timely sequencing information to community outbreak investigations.
2018年2月至4月期间,在英格兰东北部一个小乡村地区,从28例病例中分离出一种独特的5个单核苷酸多态性(SNP)毒株,其中5例通过全基因组测序(WGS)前瞻性确定。感染呈现严重的临床症状,10例住院(36%),2例患有侵袭性疾病,并有2例死亡报告。访谈确定24例(86%)曾接触当地一家独立肉店(肉店A)。一项使用通过系统数字拨号招募的对照进行的病例对照研究表明,病例食用肉店A熟肉的可能性高出68倍(调整后的比值比为68.1;95%置信区间:1.9 - 2387.6;P = 0.02)。在该场所出售的一份熟肉样本中也分离出了与28例疫情病例基因高度相关的毒株。流行病学和微生物学调查表明,此次疫情可能与涉案肉店供应的即食食品消费有关。尽管食品业务位于农村地区,但仍涉及相对大量的病例,通过WGS确定了居住在东北部和约克郡各地的病例,证明了及时的测序信息对社区疫情调查的益处。