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卷积神经网络中基于对象的反馈注意力机制可改善数字病理学中的肿瘤检测。

Object-based feedback attention in convolutional neural networks improves tumour detection in digital pathology.

作者信息

Broad Andrew, Wright Alexander, McGenity Clare, Treanor Darren, de Kamps Marc

机构信息

School of Computing, University of Leeds, Leeds, UK.

Leeds Institute for Data Analytics, University of Leeds, Leeds, UK.

出版信息

Sci Rep. 2024 Dec 5;14(1):30400. doi: 10.1038/s41598-024-80717-3.

DOI:10.1038/s41598-024-80717-3
PMID:39638839
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11621113/
Abstract

Human visual attention allows prior knowledge or expectations to influence visual processing, allocating limited computational resources to only that part of the image that are likely to behaviourally important. Here, we present an image recognition system based on biological vision that guides attention to more informative locations within a larger parent image, using a sequence of saccade-like motions. We demonstrate that at the end of the saccade sequence the system has an improved classification ability compared to the convolutional neural network (CNN) that represents the feedforward part of the model. Feedback activations highlight salient image features supporting the explainability of the classification. Our attention model deviates substantially from more common feedforward attention mechanisms, which linearly reweight part of the input. This model uses several passes of feedforward and backward activation, which interact non-linearly. We apply our feedback architecture to histopathology patch images, demonstrating a 3.5% improvement in accuracy (p < 0.001) when retrospectively processing 59,057 9-class patches from 689 colorectal cancer WSIs. In the saccade implementation, overall agreement between expert-labelled patches and model prediction reached 93.23% for tumour tissue, surpassing inter-pathologist agreement. Our method is adaptable to other areas of science which rely on the analysis of extremely large-scale images.

摘要

人类视觉注意力使先验知识或预期能够影响视觉处理,将有限的计算资源仅分配给图像中可能在行为上具有重要意义的部分。在此,我们提出一种基于生物视觉的图像识别系统,该系统使用一系列类似扫视的运动,将注意力引导至更大父图像中信息更丰富的位置。我们证明,与代表模型前馈部分的卷积神经网络(CNN)相比,在扫视序列结束时,该系统具有更高的分类能力。反馈激活突出了支持分类可解释性的显著图像特征。我们的注意力模型与更常见的前馈注意力机制有很大不同,后者对输入的一部分进行线性重新加权。该模型使用多次前馈和反向激活,它们以非线性方式相互作用。我们将我们的反馈架构应用于组织病理学切片图像,在对来自689个结直肠癌全切片图像的59,057个9类切片进行回顾性处理时,准确率提高了3.5%(p < 0.001)。在扫视实现中,专家标记切片与模型预测之间对于肿瘤组织的总体一致性达到93.23%,超过了病理学家之间的一致性。我们的方法适用于依赖超大规模图像分析的其他科学领域。

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本文引用的文献

1
Sequential Patching Lattice for Image Classification and Enquiry: Streamlining Digital Pathology Image Processing.序列补丁晶格在图像分类和查询中的应用:简化数字病理学图像处理。
Am J Pathol. 2024 Oct;194(10):1898-1912. doi: 10.1016/j.ajpath.2024.06.007. Epub 2024 Jul 18.
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Transformer with progressive sampling for medical cellular image segmentation.基于渐进式采样的医学细胞图像分割的 Transformer。
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Attention-guided sampling for colorectal cancer analysis with digital pathology.
用于结直肠癌分析的数字病理学注意力引导采样
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Med Image Anal. 2022 Jul;79:102474. doi: 10.1016/j.media.2022.102474. Epub 2022 May 4.
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Attention Based Deep Multiple Instance Learning Approach for Lung Cancer Prediction using Histopathological Images.基于注意力的深度学习多实例学习方法在基于组织病理学图像的肺癌预测中的应用。
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Checklist for Artificial Intelligence in Medical Imaging (CLAIM): A Guide for Authors and Reviewers.医学影像人工智能清单(CLAIM):作者和审稿人指南
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Nuclear Segmentation in Histopathological Images Using Two-Stage Stacked U-Nets With Attention Mechanism.基于带有注意力机制的两阶段堆叠U-Net的组织病理学图像细胞核分割
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