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双线性 CNN 和软注意力的肺癌组织病理分割。

Histopathological Tissue Segmentation of Lung Cancer with Bilinear CNN and Soft Attention.

机构信息

School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin, China.

Department of Radiology, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China.

出版信息

Biomed Res Int. 2022 Jul 7;2022:7966553. doi: 10.1155/2022/7966553. eCollection 2022.

DOI:10.1155/2022/7966553
PMID:35845926
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9283032/
Abstract

Automatic tissue segmentation in whole-slide images (WSIs) is a critical task in hematoxylin and eosin- (H&E-) stained histopathological images for accurate diagnosis and risk stratification of lung cancer. Patch classification and stitching the classification results can fast conduct tissue segmentation of WSIs. However, due to the tumour heterogeneity, large intraclass variability and small interclass variability make the classification task challenging. In this paper, we propose a novel bilinear convolutional neural network- (Bilinear-CNN-) based model with a bilinear convolutional module and a soft attention module to tackle this problem. This method investigates the intraclass semantic correspondence and focuses on the more distinguishable features that make feature output variations relatively large between interclass. The performance of the Bilinear-CNN-based model is compared with other state-of-the-art methods on the histopathological classification dataset, which consists of 107.7 k patches of lung cancer. We further evaluate our proposed algorithm on an additional dataset from colorectal cancer. Extensive experiments show that the performance of our proposed method is superior to that of previous state-of-the-art ones and the interpretability of our proposed method is demonstrated by Grad-CAM.

摘要

全切片图像(WSI)中的自动组织分割是苏木精和伊红(H&E)染色组织病理学图像中用于肺癌准确诊断和风险分层的关键任务。通过分类和拼接分类结果可以快速对 WSI 进行组织分割。然而,由于肿瘤异质性、大的类内可变性和小的类间可变性,使得分类任务具有挑战性。在本文中,我们提出了一种新的基于双线性卷积神经网络(Bilinear-CNN)的模型,该模型具有双线性卷积模块和软注意力模块,可以解决这个问题。该方法研究了类内语义对应关系,并专注于更具区分性的特征,使类间特征输出变化相对较大。在由 107700 个肺癌斑块组成的组织病理学分类数据集上,我们将基于 Bilinear-CNN 的模型的性能与其他最先进的方法进行了比较。我们还在来自结直肠癌的附加数据集上评估了我们提出的算法。大量实验表明,我们提出的方法的性能优于以前的最先进方法,并且我们提出的方法的可解释性通过 Grad-CAM 得到了证明。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10f1/9283032/38f8837edcbe/BMRI2022-7966553.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10f1/9283032/4d98f9bc41b1/BMRI2022-7966553.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10f1/9283032/062e9b241d0a/BMRI2022-7966553.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10f1/9283032/c5fb11a427cf/BMRI2022-7966553.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10f1/9283032/80bb8c693fba/BMRI2022-7966553.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10f1/9283032/d2dde198bd94/BMRI2022-7966553.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10f1/9283032/38f8837edcbe/BMRI2022-7966553.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10f1/9283032/4d98f9bc41b1/BMRI2022-7966553.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10f1/9283032/062e9b241d0a/BMRI2022-7966553.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10f1/9283032/c5fb11a427cf/BMRI2022-7966553.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10f1/9283032/80bb8c693fba/BMRI2022-7966553.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10f1/9283032/d2dde198bd94/BMRI2022-7966553.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10f1/9283032/38f8837edcbe/BMRI2022-7966553.006.jpg

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本文引用的文献

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