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使用频率调制的细胞建模。

Cell modeling using frequency modulation.

作者信息

Jacob Jerry, Patel Nitish, Sehgal Sucheta

机构信息

Department of Electrical, Computer and Software Engineering, The University of Auckland, Auckland, New Zealand.

出版信息

PLoS One. 2024 Dec 6;19(12):e0315003. doi: 10.1371/journal.pone.0315003. eCollection 2024.

Abstract

Computational models of the cell can be used to study the impact of drugs and assess pathological risks. Typically, these models are computationally demanding or challenging to implement in dedicated hardware for real-time emulation. A new Frequency Modulation (FM) model is proposed to address these limitations. This model utilizes a single sine generator with constant amplitude, while phase and frequency are modulated to emulate an action potential (AP). The crucial element of this model is the identification of the modulating signal. Focusing on FPGA implementation, we have employed a piecewise linear polynomial with a fixed number of breakpoints to serve as the modulating signal. The adaptability of this signal permits the emulation of dynamic properties and the coupling of cells. Additionally, we have introduced a state controller that handles both of these requirements. The building blocks of the FM model have direct integer equivalents, making them suitable for implementation on digital platforms like Field Programmable Gate Arrays (FPGA). We have demonstrated wavefront propagation in 1-D and 2-D models of tissue. We have used various parameters to quantify the wavefront propagation in 2-D tissues and emulated specific cellular dysfunctions. The FM model can replicate any detailed cell model and emulate its corresponding tissue model. This model is at its preliminary stage. The FPGA implementation of this model is a work in progress. Overall, the results demonstrate that the FM model has the potential for real-time cell and tissue emulation on an FPGA.

摘要

细胞的计算模型可用于研究药物的影响并评估病理风险。通常,这些模型计算量很大,或者在专用硬件中进行实时仿真时具有挑战性。提出了一种新的调频(FM)模型来解决这些局限性。该模型利用一个振幅恒定的单正弦发生器,同时对相位和频率进行调制以模拟动作电位(AP)。该模型的关键要素是调制信号的识别。着眼于现场可编程门阵列(FPGA)实现,我们采用了具有固定断点数量的分段线性多项式作为调制信号。该信号的适应性允许对动态特性进行仿真以及细胞的耦合。此外,我们引入了一个状态控制器来处理这两个要求。FM模型的构建模块具有直接的整数等效形式,使其适合在诸如现场可编程门阵列(FPGA)之类的数字平台上实现。我们已经在一维和二维组织模型中演示了波前传播。我们使用了各种参数来量化二维组织中的波前传播并模拟特定的细胞功能障碍。FM模型可以复制任何详细的细胞模型并模拟其相应的组织模型。该模型尚处于初步阶段。该模型的FPGA实现正在进行中。总体而言,结果表明FM模型具有在FPGA上进行实时细胞和组织仿真的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f63/11623557/d55dce186607/pone.0315003.g001.jpg

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