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TGV：用于可视化传播图的工具套件。

TGV: suite of tools to visualize transmission graphs.

作者信息

Phelan Jody E, Niazi Fatima, Wang Linfeng, Ngwana-Joseph Gabrielle C, Sobkowiak Benjamin, Cohen Ted, Campino Susana, Clark Taane G

机构信息

Department of Infection Biology, London School of Hygiene and Tropical Medicine, Keppel St, London WC1E 7HT, UK.

University College London Hospitals NHS Foundation Trust, Eastman Dental Hospital, Huntley Street, London, WC1E 6DG, UK.

出版信息

NAR Genom Bioinform. 2024 Dec 5;6(4):lqae158. doi: 10.1093/nargab/lqae158. eCollection 2024 Dec.

DOI:10.1093/nargab/lqae158
PMID:39660255
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11630274/
Abstract

Graph structures are often used to visualize transmission networks generated using genomic epidemiological methods. However, tools to interactively visualize these graphs do not exist. A browser-based tool allowing users to load and interactively visualize transmission graphs was developed in JavaScript. Associated metadata can be loaded and used to annotate and filter the nodes and edges of transmission networks. The tool is available at jodyphelan.github.io/tgv.

摘要

图结构常用于可视化使用基因组流行病学方法生成的传播网络。然而，用于交互式可视化这些图的工具并不存在。我们用JavaScript开发了一个基于浏览器的工具，允许用户加载并交互式地可视化传播图。相关的元数据可以被加载并用于注释和筛选传播网络的节点和边。该工具可在jodyphelan.github.io/tgv获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4182/11630274/a00519acc972/lqae158fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4182/11630274/6f2a15d6a1f4/lqae158figgra1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4182/11630274/9f55afcfee61/lqae158fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4182/11630274/eae6f150694f/lqae158fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4182/11630274/9c4a1bc3fc75/lqae158fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4182/11630274/a00519acc972/lqae158fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4182/11630274/6f2a15d6a1f4/lqae158figgra1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4182/11630274/9f55afcfee61/lqae158fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4182/11630274/eae6f150694f/lqae158fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4182/11630274/9c4a1bc3fc75/lqae158fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4182/11630274/a00519acc972/lqae158fig4.jpg

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Population-based genomic study of malaria in seven Brazilian states and across South America.
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Transmission visualizations of healthcare infection clusters: A scoping review.医疗保健感染集群的传播可视化：一项范围综述。
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