Lukose Bincy, Goyal Saloni, Naganathan Athi N
Department of Biotechnology, Bhupat & Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India.
Protein Sci. 2025 Jan;34(1):e5250. doi: 10.1002/pro.5250.
H-NS, a nucleoid-associated protein (NAP) from enterobacteria, regulates gene expression by dynamically transducing environmental cues to conformational assembly and DNA binding. In this work, we show that H-NS from Escherichia coli, which can assemble into octameric and tetrameric oligomerization states, forms spontaneous micron-sized liquid-like condensates with DNA at sub-physiological concentrations in vitro. The heterotypic condensates are metastable at 298 K, partially solubilizing with time, while still retaining their liquid-like properties. The condensates display UCST-like phase behavior solubilizing at higher temperatures, but with a large decrease in droplet-assembly propensities at 310 K and at higher ionic strength. Condensate formation can be tuned in a cyclic manner between 298 and 310 K with the extent of reversibility determined by the incubation time, highlighting strong hysteresis. An engineered phospho-mimetic variant of H-NS (Y61E), which is dimeric and only weakly binds DNA, is unable to form condensates. The Y61E mutant solubilizes pre-formed H-NS condensates with DNA in a few minutes with nearly an order of magnitude speed-up in droplet dissolution at 310 K relative to 298 K, demonstrating rapid molecular transport between dilute and condensed phases. Our results establish that the oligomerization of H-NS is intrinsically tied not only to DNA binding but also its phase-separation tendencies, while showcasing the regulatable and programmable nature of heterotypic condensates formed by an archetypal NAP via multiple cues and their lifetimes.
H-NS是一种来自肠杆菌的类核相关蛋白(NAP),它通过将环境信号动态转化为构象组装和DNA结合来调节基因表达。在这项研究中,我们发现大肠杆菌中的H-NS能够组装成八聚体和四聚体低聚状态,在体外亚生理浓度下与DNA形成自发的微米级液体样凝聚物。这些异型凝聚物在298K时是亚稳态的,会随着时间部分溶解,但仍保留其液体样性质。凝聚物表现出类似上临界溶液温度(UCST)的相行为,在较高温度下溶解,但在310K及更高离子强度下液滴组装倾向大幅降低。凝聚物的形成可以在298K和310K之间以循环方式调节,可逆程度由孵育时间决定,突出了强烈的滞后现象。一种工程化的H-NS磷酸模拟变体(Y61E),它是二聚体且仅弱结合DNA,无法形成凝聚物。Y61E突变体在几分钟内就能溶解预先形成的H-NS与DNA的凝聚物,在310K时液滴溶解速度比298K时快近一个数量级,证明了稀相和凝聚相之间的快速分子运输。我们的结果表明,H-NS的低聚不仅与DNA结合内在相关,还与其相分离倾向相关,同时展示了由典型NAP通过多种线索形成的异型凝聚物的可调节和可编程性质及其寿命。