Tkačik Gašper, Dubuis Julien O, Petkova Mariela D, Gregor Thomas
Institute of Science and Technology Austria, A-3400 Klosterneuburg, Austria
Joseph Henry Laboratories of Physics, Princeton University, Princeton, New Jersey 08544 Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544.
Genetics. 2015 Jan;199(1):39-59. doi: 10.1534/genetics.114.171850. Epub 2014 Oct 31.
The concept of positional information is central to our understanding of how cells determine their location in a multicellular structure and thereby their developmental fates. Nevertheless, positional information has neither been defined mathematically nor quantified in a principled way. Here we provide an information-theoretic definition in the context of developmental gene expression patterns and examine the features of expression patterns that affect positional information quantitatively. We connect positional information with the concept of positional error and develop tools to directly measure information and error from experimental data. We illustrate our framework for the case of gap gene expression patterns in the early Drosophila embryo and show how information that is distributed among only four genes is sufficient to determine developmental fates with nearly single-cell resolution. Our approach can be generalized to a variety of different model systems; procedures and examples are discussed in detail.
位置信息的概念对于我们理解细胞如何在多细胞结构中确定自身位置并由此决定其发育命运至关重要。然而,位置信息既未在数学上得到定义,也未以一种有原则的方式进行量化。在此,我们在发育基因表达模式的背景下提供了一个信息论定义,并定量研究了影响位置信息的表达模式特征。我们将位置信息与位置误差的概念联系起来,并开发了从实验数据中直接测量信息和误差的工具。我们以果蝇早期胚胎中间隙基因表达模式为例阐述了我们的框架,并展示了仅分布在四个基因中的信息如何足以以近乎单细胞分辨率确定发育命运。我们的方法可以推广到各种不同的模型系统;详细讨论了相关程序和示例。