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小麦中基因家族抗旱和耐热相关候选基因的全基因组鉴定、分类、表达分析及筛选

Genome-Wide Identification, Classification, Expression Analysis, and Screening of Drought and Heat Resistance-Related Candidates of the Gene Family in Wheat.

作者信息

Cao Miyuan, Zhang Yue, Zou Xiaoxiao, Yin Huangping, Yin Yan, Li Zeqi, Xiao Wenjun, Liu Shucan, Li Yongliang, Guo Xinhong

机构信息

College of Biology, Hunan University, Changsha 410082, China.

Chongqing Research Institute, Hunan University, Chongqing 401120, China.

出版信息

Plants (Basel). 2024 Nov 30;13(23):3377. doi: 10.3390/plants13233377.

DOI:10.3390/plants13233377
PMID:39683170
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11644269/
Abstract

Plant respiratory burst oxidase homologs (Rbohs) are key enzymes that produce reactive oxygen species (ROS), which serve as signaling molecules regulating plant growth and stress responses. In this study, 39 genes (-) were identified. These genes were distributed unevenly among the wheat genome's fourteen chromosomes, with the exception of homoeologous group 2 and 7 and chromosomes 4A, as well as one unidentified linkage group (Un). TaRbohs were classified into ten distinct clades, each sharing similar motif compositions and gene structures. The promoter regions of s contained -elements related to hormones, growth and development, and stresses. Furthermore, five genes (, , , , and ) exhibited strong evolutionary conservation. Additionally, a Ka/Ks analysis confirmed that purifying selection was the predominant force driving the evolution of these genes. Expression profiling and qPCR results further indicated differential expression patterns of genes between heat and drought stresses. , , , , , and were significantly upregulated under multiple stress conditions, whereas was only elevated in response to drought stress. Collectively, our findings provide a systematic analysis of the wheat gene family and establish a theoretical framework for our future research on the role of genes in response to heat and drought stress.

摘要

植物呼吸爆发氧化酶同源物(Rbohs)是产生活性氧(ROS)的关键酶,ROS作为调节植物生长和应激反应的信号分子。在本研究中,鉴定出39个基因(-)。这些基因在小麦基因组的14条染色体上分布不均,2号和7号同源群以及4A染色体除外,还有一个未鉴定的连锁群(Un)。TaRbohs被分为十个不同的进化枝,每个进化枝具有相似的基序组成和基因结构。s的启动子区域包含与激素、生长发育和胁迫相关的元件。此外,五个基因(、、、和)表现出很强的进化保守性。另外,Ka/Ks分析证实纯化选择是驱动这些基因进化的主要力量。表达谱分析和qPCR结果进一步表明基因在热胁迫和干旱胁迫之间的差异表达模式。、、、、和在多种胁迫条件下显著上调,而仅在干旱胁迫下升高。总的来说,我们的研究结果对小麦基因家族进行了系统分析,并为我们未来研究基因在应对热胁迫和干旱胁迫中的作用建立了理论框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/d9d5d3c3085f/plants-13-03377-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/6c184569a384/plants-13-03377-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/0fa5491e3222/plants-13-03377-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/d045f5fdb14b/plants-13-03377-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/793fe99ce74a/plants-13-03377-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/68ecbcd9e381/plants-13-03377-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/f4b5c277b50d/plants-13-03377-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/6d5cfa03f37d/plants-13-03377-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/d9d5d3c3085f/plants-13-03377-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/6c184569a384/plants-13-03377-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/0fa5491e3222/plants-13-03377-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/d045f5fdb14b/plants-13-03377-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/793fe99ce74a/plants-13-03377-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/68ecbcd9e381/plants-13-03377-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/f4b5c277b50d/plants-13-03377-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/6d5cfa03f37d/plants-13-03377-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afe/11644269/d9d5d3c3085f/plants-13-03377-g008.jpg

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Genome-wide analysis of respiratory burst oxidase homolog () genes in species and insight into ROS-mediated metabolites biosynthesis and resin deposition.物种中呼吸爆发氧化酶同源物()基因的全基因组分析以及对活性氧介导的代谢物生物合成和树脂沉积的洞察。
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Complex plant responses to drought and heat stress under climate change.
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