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三种植物中家族基因的全基因组鉴定及芥蓝在非生物胁迫下的功能特性分析

Genome-Wide Identification of Family Genes in Three Plant Species and Functional Characterization of s in Chinese Kale Under Abiotic Stresses.

作者信息

Zhao Yuwan, Chen Shunquan, Qin Mao, Shui Kejuan, Li Riqing, Yang Baoli, Liu Jin, Chen Zhufeng

机构信息

Center for Biological Science and Technology, Key Laboratory of Cell Proliferation and Regulation Biology of Ministry of Education, Zhuhai Macao Biotechnology Joint Laboratory, Faculty of Arts and Sciences, Beijing Normal University, Zhuhai 519087, China.

Shenzhen Inspection and Testing Center of Agricultural Product Quality and Safety, Shenzhen 518071, China.

出版信息

Int J Mol Sci. 2024 Nov 30;25(23):12907. doi: 10.3390/ijms252312907.

Abstract

FCS-like zinc finger (FLZ) proteins are plant-specific regulatory proteins, which contain a highly conserved FLZ domain, and they play critical roles in plant growth and stress responses. Although the family has been systematically characterized in certain plants, it remains underexplored in species, which are vital sources of vegetables, edible oils, and condiments for human consumption and are highly sensitive to various abiotic stresses. Following the whole-genome triplication events (WGT) in , elucidating how the genes have expanded, differentiated, and responded to abiotic stresses is valuable for uncovering the genetic basis and functionality of these genes. In this study, we identified a total of 113 genes from three diploid species and classified them into four groups on the basis of their amino acid sequences. Additionally, we identified 109 collinear gene pairs across these species, which are dispersed among different chromosomes, suggesting that whole-genome duplication (WGD) has significantly contributed to the expansion of the family. Subcellular localization revealed that six representative BolFLZ proteins are located in the nucleus and cytoplasm. Yeast two-hybrid assays revealed that 13 selected BolFLZs interact with BolSnRK1α1 and BolSnRK1α2, confirming the conservation of the SnRK1α-FLZ module in species. Expression profile analysis revealed differential expression patterns of across various tissues. Notably, the expression levels of seven genes out of the fifteen genes analyzed changed significantly following treatment with various abiotic stressors, indicating that the genes play distinct physiological roles and respond uniquely to abiotic stresses in species. Together, our results provide a comprehensive overview of the gene family in species and insights into their potential applications for enhancing stress tolerance and growth in Chinese kale.

摘要

类FCS锌指(FLZ)蛋白是植物特有的调控蛋白,其含有一个高度保守的FLZ结构域,在植物生长和胁迫响应中发挥关键作用。尽管该家族已在某些植物中得到系统表征,但在作为人类食用蔬菜、食用油和调味品的重要来源且对各种非生物胁迫高度敏感的物种中,其仍未得到充分研究。在经历全基因组三倍化事件(WGT)后,阐明该基因如何扩增、分化以及对非生物胁迫作出反应,对于揭示这些基因的遗传基础和功能具有重要意义。在本研究中,我们从三个二倍体物种中总共鉴定出113个该基因,并根据其氨基酸序列将它们分为四组。此外,我们在这些物种中鉴定出109对共线基因对,它们分散在不同染色体上,这表明全基因组复制(WGD)对该家族的扩增有显著贡献。亚细胞定位显示,六个代表性的BolFLZ蛋白位于细胞核和细胞质中。酵母双杂交试验表明,13个选定的BolFLZ与BolSnRK1α1和BolSnRK1α2相互作用,证实了SnRK1α-FLZ模块在物种中的保守性。表达谱分析揭示了该基因在不同组织中的差异表达模式。值得注意的是,在分析的15个基因中,有7个基因在受到各种非生物胁迫处理后的表达水平发生了显著变化,这表明该基因在物种中发挥着不同的生理作用,并对非生物胁迫有独特的响应。总之,我们的结果提供了物种中该基因家族的全面概述,并为其在提高芥蓝胁迫耐受性和生长方面的潜在应用提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01bb/11641214/0dc6e422ccd9/ijms-25-12907-g001.jpg

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