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竹子中基因家族的全基因组鉴定与表达分析

Genome-Wide Identification and Expression Analysis of Gene Family in Bamboos.

作者信息

Hou Lihan, Zhang Huiting, Fan Yakun, Zhang Yaling, Zhang Wengen, Yang Guangyao, Guo Chunce, Wang Meixia

机构信息

Jiangxi Provincial Key Laboratory of Improved Variety Breeding and Efficient Utilization of Native Tree Species, Forestry College, Jiangxi Agricultural University, Nanchang 330045, China.

Tree Fruit Research Laboratory, USDA-ARS, Wenatchee, WA 98801, USA.

出版信息

Int J Mol Sci. 2024 Dec 5;25(23):13062. doi: 10.3390/ijms252313062.

Abstract

The regulation of flowering time is a highly coordinative process that involves the interplay of multiple genes. The () gene is one of those important players. In this study, we identified and characterized genes in bamboo, a plant with the unique monocarpy flowering phenomenon. An angiosperm-wide gene family analysis demonstrated that unlike the most recent common ancestor (MRCA) of angiosperms, which had only one gene, five copies were present in the MRCA of Poaceae, and the same gene copy number was retained in the MRCA of the Bambusoideae subfamily. Further analysis of the Poaceae gene family revealed five distinctive clades resulted from four duplication events, with two of these events being specific to the Bambusoideae subfamily. High levels of conservation were observed in the gene structure and amino acid composition of structural domain among the genes across bamboos and their close relatives, indicating functional conservation. Furthermore, gene expression profiling indicated that gene expression in bamboo closely resemble the expression patterns of their homologs in rice. Additionally, overexpression of two bamboo genes ( and ) in resulted in an early flowering phenotype, demonstrating their involvement in the regulation of the flowering process in plants. Our findings provide a comprehensive resource for understanding the evolution, structure, expression, and function of genes in Poaceae and Bambusoideae.

摘要

开花时间的调控是一个高度协调的过程,涉及多个基因的相互作用。()基因是其中的重要参与者之一。在本研究中,我们在具有独特的单次结实开花现象的竹子中鉴定并表征了基因。全被子植物范围的基因家族分析表明,与被子植物的最近共同祖先(MRCA)不同,后者只有一个基因,禾本科的MRCA中有五个基因拷贝,并且在竹亚科的MRCA中保留了相同的基因拷贝数。对禾本科基因家族的进一步分析揭示了由四次复制事件产生的五个独特分支,其中两次事件是竹亚科特有的。在竹子及其近缘种的基因中,观察到基因结构和结构域氨基酸组成具有高度保守性,表明功能保守。此外,基因表达谱分析表明,竹子中的基因表达与水稻中同源基因的表达模式非常相似。此外,在中过表达两个竹子基因(和)导致早花表型,证明它们参与植物开花过程的调控。我们的研究结果为理解禾本科和竹亚科中基因的进化、结构、表达和功能提供了全面的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15f1/11641677/c26b9522aef0/ijms-25-13062-g001.jpg

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本文引用的文献

1
A painless way to customize Circos plot: From data preparation to visualization using TBtools.
Imeta. 2022 Jul 4;1(3):e35. doi: 10.1002/imt2.35. eCollection 2022 Sep.
3
The Pharus latifolius genome bridges the gap of early grass evolution.
Plant Cell. 2021 May 31;33(4):846-864. doi: 10.1093/plcell/koab015.
5
OsFD4 promotes the rice floral transition via florigen activation complex formation in the shoot apical meristem.
New Phytol. 2021 Jan;229(1):429-443. doi: 10.1111/nph.16834. Epub 2020 Aug 27.
6
TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data.
Mol Plant. 2020 Aug 3;13(8):1194-1202. doi: 10.1016/j.molp.2020.06.009. Epub 2020 Jun 23.
7
Functional Divergence of the Arabidopsis Florigen-Interacting bZIP Transcription Factors FD and FDP.
Cell Rep. 2020 Jun 2;31(9):107717. doi: 10.1016/j.celrep.2020.107717.
8
CDD/SPARCLE: the conserved domain database in 2020.
Nucleic Acids Res. 2020 Jan 8;48(D1):D265-D268. doi: 10.1093/nar/gkz991.
9
PlantRegMap: charting functional regulatory maps in plants.
Nucleic Acids Res. 2020 Jan 8;48(D1):D1104-D1113. doi: 10.1093/nar/gkz1020.
10
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.
Nat Biotechnol. 2019 Aug;37(8):907-915. doi: 10.1038/s41587-019-0201-4. Epub 2019 Aug 2.

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